Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15220 817 / 0 Protein kinase superfamily protein (.1) AT1G53165 749 / 0 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G69220 261 / 4e-76 SIK1 Protein kinase superfamily protein (.1.2) AT5G14720 217 / 4e-61 Protein kinase superfamily protein (.1) AT1G79640 216 / 1e-60 Protein kinase superfamily protein (.1.2) AT4G24100 203 / 7e-56 Protein kinase superfamily protein (.1) AT4G10730 201 / 2e-55 Protein kinase superfamily protein (.1) AT1G53570 192 / 2e-52 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 191 / 6e-51 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT3G13530 191 / 1e-50 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397600 [exp] 1118 / 0 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.010G157400 [exp] 263 / 7e-77 AT1G69220 855 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 219 / 8e-62 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186700 [exp] 216 / 2e-60 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G084700 [exp] 211 / 1e-58 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 210 / 1e-58 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G146000 [exp] 207 / 2e-57 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 192 / 3e-51 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 192 / 3e-51 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042862 [exp] 875 / 0 AT3G15220 827 / 0.0 Protein kinase superfamily protein (.1) Lus10028163 [exp] 841 / 0 AT1G53165 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10037070 [exp] 264 / 6e-77 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036915 [exp] 264 / 6e-77 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014542 [exp] 217 / 2e-60 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000416 [exp] 210 / 2e-58 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026108 [exp] 209 / 2e-58 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000878 [exp] 207 / 2e-57 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 207 / 3e-57 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 202 / 8e-56 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G116300.11 pacid=42782310 polypeptide=Potri.011G116300.11.p locus=Potri.011G116300 ID=Potri.011G116300.11.v4.1 annot-version=v4.1 ATGGCTGATGCAGCTGGGTTAATGGAGGCTGCTGGGGCTAGATTTAGTTCACTGGAGTTGATCGGTAGAGGATCATTCGGTGATGTTTATAAAGCGTTTG ATAAGGAGCTTAACAAAGAAGTTGCCATCAAAGTTATTGATTTGGAAGAATCCGAGGATGAAATTGAAGACATTCAAAAGGAAATTTCTGTTTTGCAACA GTGCCGATCTCCATATATCACTGAGTACTATGGATCCTATCTTCACCAGACAAAACTATGGATAATTATGGAGTACATGGCTGGTGGATCTGTTGCTGAC CTACTGCAATCAGGTCCTCCACTGGATGAAATGTCAATTGCTTGCATTTTACGAGACTTGCTGCATGCTATTGAATATTTACACAACGAACAAAAAATTC ACAGAGATATTAAAGCTGCCAACATTTTGTTGAGCGAGAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGTACTATATCTAG GAGAAAGACTTTTGTAGGAACACCATTCTGGATGGCTCCGGAGGTGATTCAGAATTCAGAAGGATATGATGCAAAGGCAGATATTTGGTCTCTGGGGATA ACTGCTATTGAGATGGCAAAAGGGGAACCTCCACTTGCCGATCTTCACCCTATGAGGGTTCTCTTTATCATACCTCGAGATAATCCACCACAGCTTGATG AGCACTTTTCCCGTCCTATGAAAGATTTTGTCTCATCTTGTTTAAAGAAAGTTCCTGACGAGAGGCCAAATGCTAAGGATCTTCTTAAGCACCGGTTTAT TAGAAATGCTAGAAAGAGCCCAAGGCTTCTGGAAAGAATAAGAGAGCGCCCGAAGTACCAAATAAAGGATGCAGAAACCCCCAGCAATGGCCGTAAAGGA ATCGGGGAGGGTTCTGATACCGTGAAGGTGGCAAGAGACATAAAGCCTGATGGAACTGTTCGAATCAGTGGTCAGGGAAAACCCTTCAAAAATGCTGGAT GGGACTTCAGCATTGGTGGATCACAGGCTACAGGAACTGTTAGAAGTGCTGCAAGACCACCTCAGGTTAGAGAAAAGAAAACAGATATTTCATACAATAA GGATACCCAAAGAAGAGCTTCAGAGAGTGGTAACCATTTGTTATCTGCATCTGGAAATGCACTTCAGGAATCACTAGATTTATCCTTTGGTAAAGATGCT AGGGATTCATATCACGATGATCGTCAAAATAACTCACTTGATGATGATGATTTGTCCGTGAGTGGATCAGGAACTGTTGTCATCCATACTCCTAAAGGAT CTCAGTCTTCTGCCATATTTCGAGATCAAAGCAATGCGTCTAGTAGCTCATTTGCTTCTTTTGAAGATGCTTCTACCAGTGGAACAGTTGTTTTCTATGG TCAACATGATGAATCTGATTCTCCTCGGACTCCTAAATCCAGATTAGGAATGCAAGAGAGAACTTCACGTGCCTCACTAGAAGACAGTGCTCTAAATCTC GCTGAGGCAAGGGCTGCATTTCAAGGAGGGTTGAGGAAAGGAAATGCTAGAGAAAGGTTTGTTCCAAACAAGAATAACAGTGATGGGCTGGAGAGCAGAA GAAGAGAGACATTGACTAACAGCTCTGATTCGTCCAGAAGTTCTCGTGAATACTCTGCTGTGCCAAAAGCTTTTTCAAGATCACGCCAAGCAAGCGATGA TGAAGAAAGTGCTAGAATAGCATCATCGTCAGCACCTTTGTCAGTTTTGCTTATCCCATCCTTAAAAGAGGCTGTTGCTGATGATTCAGAAGGATCAGTT GTGCATGCAGTAACAAATTCACTTGTAACTATGGAGCGCTTAAAGCCTGGATCTTGTGACGTCTTGGTCAGAAGTTTGCTTCAGCGATTGGCAAGCTCGA AAGAATCTTCACTGAAAGATCTGCAGGAGCTTGCAGCTCGCCTCTTAAGCAAGGGGAAGCCAGCCTCAGAAGAAACCCAAAATGCAAATACAGAAGCTGA CAACAGGAAAAAGCAACCGACCAAGGAATTTAATTCAAATGCCAATTTAAGCCCGCTTGCGAGGTTTCTGCTCTCAAGATGGCAGGGACAAAGTTCTTGA
AA sequence Show only first row Show all	>Potri.011G116300.11 pacid=42782310 polypeptide=Potri.011G116300.11.p locus=Potri.011G116300 ID=Potri.011G116300.11.v4.1 annot-version=v4.1 MADAAGLMEAAGARFSSLELIGRGSFGDVYKAFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLQQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVAD LLQSGPPLDEMSIACILRDLLHAIEYLHNEQKIHRDIKAANILLSENGDVKVADFGVSAQLTSTISRRKTFVGTPFWMAPEVIQNSEGYDAKADIWSLGI TAIEMAKGEPPLADLHPMRVLFIIPRDNPPQLDEHFSRPMKDFVSSCLKKVPDERPNAKDLLKHRFIRNARKSPRLLERIRERPKYQIKDAETPSNGRKG IGEGSDTVKVARDIKPDGTVRISGQGKPFKNAGWDFSIGGSQATGTVRSAARPPQVREKKTDISYNKDTQRRASESGNHLLSASGNALQESLDLSFGKDA RDSYHDDRQNNSLDDDDLSVSGSGTVVIHTPKGSQSSAIFRDQSNASSSSFASFEDASTSGTVVFYGQHDESDSPRTPKSRLGMQERTSRASLEDSALNL AEARAAFQGGLRKGNARERFVPNKNNSDGLESRRRETLTNSSDSSRSSREYSAVPKAFSRSRQASDDEESARIASSSAPLSVLLIPSLKEAVADDSEGSV VHAVTNSLVTMERLKPGSCDVLVRSLLQRLASSKESSLKDLQELAARLLSKGKPASEETQNANTEADNRKKQPTKEFNSNANLSPLARFLLSRWQGQSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	0	1
AT2G43420			3-beta hydroxysteroid dehydrog...		Potri.007G131200 [exp]	1.41	0.9535
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	2.44	0.9489
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	2.82	0.9502
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	5.91	0.9340
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.010G076500 [exp]	6.00	0.9324
AT5G13500			unknown protein		Potri.001G028100 [exp]	7.93	0.9203
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	8.00	0.9406
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	8.77	0.9197	ARAC2.1
AT1G28240			Protein of unknown function (D...		Potri.011G053000 [exp]	10.19	0.9044
AT1G77280			Protein kinase protein with ad...		Potri.005G182800 [exp]	10.39	0.9168

Compare expression of checked genes

Potri.011G116300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.