Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53900 439 / 2e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 407 / 4e-141 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 133 / 7e-35 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT1G06150 90 / 5e-19 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31280 89 / 9e-19 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT2G27230 80 / 7e-16 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 55 / 5e-08 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT4G16430 49 / 6e-06 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G24352 44 / 1e-05 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397800 [exp] 727 / 0 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.010G096400 [exp] 137 / 1e-36 AT1G60060 459 / 4e-162 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.014G024000 [exp] 136 / 6e-36 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Potri.005G222500 [exp] 94 / 2e-20 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 94 / 3e-20 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.009G017700 [exp] 77 / 9e-15 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.006G090000 [exp] 74 / 6e-14 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G216900 [exp] 71 / 1e-12 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.003G144900 [exp] 66 / 2e-11 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041936 [exp] 446 / 7e-156 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10005549 [exp] 441 / 2e-153 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10012986 [exp] 139 / 4e-37 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10029179 [exp] 135 / 2e-35 AT1G60060 429 / 6e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10024800 [exp] 125 / 2e-32 AT1G60060 221 / 8e-70 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10018736 [exp] 117 / 1e-29 AT1G60060 220 / 4e-69 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10033880 [exp] 77 / 1e-14 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033222 [exp] 65 / 6e-11 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10000609 [exp] 64 / 2e-10 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10001527 [exp] 64 / 2e-10 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G116400.1 pacid=42781288 polypeptide=Potri.011G116400.1.p locus=Potri.011G116400 ID=Potri.011G116400.1.v4.1 annot-version=v4.1 ATGGTGGGCTCAGGAGGAGCAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTTAGAAGCGTCTGTCTCAACTCAGACTGGACTT ACTCTGTCTTCTGGACGATTCGTCCTCGCCCAAGAGTTAGAAGTGGTAATGGTTGCAAGGTCGGAGATGACAATGGAAGCTTGATGTTAATGTGGGAAGA TGGGTTTTGCCGGGGAAGAGTTGGAGACTGTTTGGAAGAAATTGATGGAGAGGATCCTGTCAGGAAATCATTCGGCAAAATGTCCATTCAGCTATATAAT TATGGAGAAGGGTTAATGGGAAAGGTTGCTTCAGATAAGTGTCACAAATGGGTCTTCAAAGAACCTACTGAATGTGAACCAAATATTTCCAACTACTGGC AGAGTTCTTTTGATGCTCTTCCTCCGGAATGGACAGATCAATTTGATTCTGGTATTCAGACCATTGCTGTCATACAAGCTGGCCATGGCCTTCTGCAACT GGGCTCCAGCAAGATTATACCTGAAGACCTTCATTTTGTACTAAGAATGAGGCATGCATTTGAATCTCTGGGCTACCAATCTGGTTCTTACCTCTCCCAG CTCTTTTCACCTACCAGAAACACTTCCTCTTCTTCATTACCTACTAAGCAATCTGCAATTCCAACCCGCCCACCACCGCCACTTTTCAACTGGAGTCAAA GGCCACTTCCATCTGCTGCTTCTTTGCTGTCTTCACCGAATTTTCAAAACCATGCAGCTAGACTTGGATTTCCACAAGCCAAAGATGAACCCCATATGTT TACCCTTCCCCATTCATCCGAAACCCGAGTGGAAGAGATTACGGGAGAGCATGAAAATGACATCAAATGGCCTAATGGGCTGTCTTTCTTCAATGCTCTC ACTGGAAGGGCAGACAATGCCAAGCTTTTGTTTAGCCCTGAGAGCTTAGGAAACAAAGGAGACCAAAATCACCACCCTCTTATCCTTGAAGGGAAGAGTC CAAATCCAAATTCAGATGCTTCAAATATGAATAATTCTGATGTTATGAACCCCAATGAGTTCTTGAGTTTGGATAGCCATCCAGATAGTGCAAGGAAAAT GGAAAACAAGTACAAAAGGAGCTTCACTTTTCCTGCAAGAATGACTTCGTCATCTTCTTCGACATCTATTGATCATCATCAGCACCAAGCTGTGGATTAC CGGAACCCTGAACCTGGGGTGTATTCAGACATCATGGAGACTTTCTTGGAGTGA
AA sequence Show only first row Show all	>Potri.011G116400.1 pacid=42781288 polypeptide=Potri.011G116400.1.p locus=Potri.011G116400 ID=Potri.011G116400.1.v4.1 annot-version=v4.1 MVGSGGADRSKEAVGMMALHEALRSVCLNSDWTYSVFWTIRPRPRVRSGNGCKVGDDNGSLMLMWEDGFCRGRVGDCLEEIDGEDPVRKSFGKMSIQLYN YGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFDSGIQTIAVIQAGHGLLQLGSSKIIPEDLHFVLRMRHAFESLGYQSGSYLSQ LFSPTRNTSSSSLPTKQSAIPTRPPPPLFNWSQRPLPSAASLLSSPNFQNHAARLGFPQAKDEPHMFTLPHSSETRVEEITGEHENDIKWPNGLSFFNAL TGRADNAKLLFSPESLGNKGDQNHHPLILEGKSPNPNSDASNMNNSDVMNPNEFLSLDSHPDSARKMENKYKRSFTFPARMTSSSSSTSIDHHQHQAVDY RNPEPGVYSDIMETFLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53900			Serine/threonine-protein kinas...		Potri.011G116400 [exp]	0	1
AT3G58480			calmodulin-binding family prot...		Potri.016G063000 [exp]	1.41	0.8428
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	1.73	0.8729
AT4G39900			unknown protein		Potri.008G145000 [exp]	3.16	0.7519
					Potri.011G125251 [exp]	4.24	0.8407
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170000 [exp]	8.71	0.8159
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	9.79	0.7887
AT4G06599			ubiquitin family protein (.1)		Potri.004G219300 [exp]	13.26	0.7381
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	14.00	0.7257
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.002G032400 [exp]	17.43	0.7655
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	18.57	0.7407	RKF1.1

Compare expression of checked genes

Potri.011G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.