Plant FIBer expression Database

Potri.011G116600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53163 47 / 6e-06 unknown protein
AT3G15250 41 / 0.0003 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G398000
[exp]
277 / 1e-94 AT1G53163 71 / 2e-14 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G116600.1 pacid=42782327 polypeptide=Potri.011G116600.1.p locus=Potri.011G116600 ID=Potri.011G116600.1.v4.1 annot-version=v4.1
ATGGATATAAGCACAGTCTCACCCAAAACTCCCACAAGAAATAATCCCATGGAAGAAAACCACCACAAAAAAACCAGCTCTAGAGAAGACATCTTCTCCT
TTCCTAGCACCCCAAGTACTCTAGATCAAGATTCTGATTTCGAGTTCGGTTGTCTAACGCCGGATTCTCCCTCTAGCGATCCAAACAAGAGTTCACCAGC
TGATCATCTTTTCTTCAATGGCCGCCTGTTGCCACATTCTTTTCCTGTACTTCAACAACAACCAGCAACTATGCTATTTATTGATAACATTTATCGCGCA
CCTAGCAGAGCAAGCAGTGTCAGCAGCAAGGATTCCCTCATGTCATCAAGAAGTAATAGCACTAATAGTAGTAGAAGCAGTGTTAGCAGTGCGAGAACAA
GCTCAAGTGACAATTCAGAGAGGAGAAGATTGTATAATATTACTAGCAGCCAAACACCCTTGGCTAGTAAAGCTGTTATAGCACAATTATATGGATCTTC
TCAAAGGTGGCAACATATCATGCCTGTACCAGCTGCAGCTTTGAAACGCGCGGATTCACGAAGAAAAAGTGGCCGGATTTTGGTGAAAGAAGGGTTGAGC
AACAACAAGAAACAAATAAAGAAAGGGAAAAGAGACAGGTCTGGGTTTTGGAGGAGATTTTTCAGGTCATTTTTGGTAGCCTGTAGAGAATGTCATGCCA
TGGAACCATCCACAAAGGATGACATATTGGACGGAAATATCAAGTTATGA
AA sequence
>Potri.011G116600.1 pacid=42782327 polypeptide=Potri.011G116600.1.p locus=Potri.011G116600 ID=Potri.011G116600.1.v4.1 annot-version=v4.1
MDISTVSPKTPTRNNPMEENHHKKTSSREDIFSFPSTPSTLDQDSDFEFGCLTPDSPSSDPNKSSPADHLFFNGRLLPHSFPVLQQQPATMLFIDNIYRA
PSRASSVSSKDSLMSSRSNSTNSSRSSVSSARTSSSDNSERRRLYNITSSQTPLASKAVIAQLYGSSQRWQHIMPVPAAALKRADSRRKSGRILVKEGLS
NNKKQIKKGKRDRSGFWRRFFRSFLVACRECHAMEPSTKDDILDGNIKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G53163 unknown protein Potri.011G116600
[exp]
0 1
AT3G18670 Ankyrin repeat family protein ... Potri.004G003600
[exp]
1.00 0.9295
AT3G48770 DNA binding;ATP binding (.1) Potri.015G102200
[exp]
2.82 0.9251
AT4G16380 Heavy metal transport/detoxifi... Potri.006G018400
[exp]
3.16 0.9006
AT5G45480 Protein of unknown function (D... Potri.015G113700
[exp]
3.46 0.9169
AT4G21960 PRXR1 Peroxidase superfamily protein... Potri.004G015300
[exp]
5.19 0.8693 Pt-PRXR1.1
AT5G46700 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetr... Potri.003G093000
[exp]
5.47 0.9092
AT5G62940 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BI... Potri.015G077100
[exp]
7.21 0.8983
AT4G39700 Heavy metal transport/detoxifi... Potri.007G087300
[exp]
9.48 0.9070
AT5G43240 Protein of unknown function (D... Potri.001G247300
[exp]
9.53 0.9052
Potri.001G075201
[exp]
9.64 0.8608

Potri.011G116600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.