Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53890 1279 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 863 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G72300 805 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 503 / 1e-159 BRL1 BRI1 like (.1.2) AT3G13380 479 / 1e-150 BRL3 BRI1-like 3 (.1) AT5G07280 457 / 4e-142 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 447 / 2e-138 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 445 / 5e-138 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G62230 417 / 3e-129 ERL1 ERECTA-like 1 (.1.2) AT1G17240 407 / 3e-128 AtRLP2 receptor like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398500 [exp] 1724 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.010G097700 [exp] 861 / 0 AT2G02220 1187 / 0.0 phytosulfokin receptor 1 (.1) Potri.008G144700 [exp] 857 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.003G074000 [exp] 823 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 815 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G139000 [exp] 490 / 8e-154 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 479 / 2e-149 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G140500 [exp] 469 / 2e-147 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.001G472900 [exp] 470 / 1e-146 AT1G55610 1485 / 0.0 BRI1 like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009213 [exp] 1378 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 1369 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10019722 [exp] 832 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10016395 [exp] 829 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 470 / 5e-147 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 456 / 1e-141 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 447 / 7e-139 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10006817 [exp] 447 / 2e-138 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 444 / 1e-137 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10005784 [exp] 427 / 2e-131 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G116900.1 pacid=42781961 polypeptide=Potri.011G116900.1.p locus=Potri.011G116900 ID=Potri.011G116900.1.v4.1 annot-version=v4.1 ATGGTGGTGGTGGAGTCTGCTCCAATGATTTTCCTCAGATGTGCGTTCTTCGCTTGCTTTCTTTGTTCATCTTGGGGTCTCAAAACTATAGCTCAATCTT GTGATCCAAATGATTCTCTGGCCCTGAAGGAATTTGCTGGAAACCTCACAAATGGGTCCATCATAACATCATGGTCCAACAAGGCTGACTGCTGTCAATG GGATGGGGTTGTATGTGGGAGCAATATCAATGGCTCAATTCACAGGAGAGTGACCATGCTGATTCTTTCCAGAAAGGGTCTTCAAGGGTTAATTCCACGC TCTATCGGCCATTTAGACCAGCTGAAATCACTTGATCTCTCTTGCAATCATCTTCAAGGTGGATTGCCTTTGGAGCTCTCAAGCTTGAAGCAGATGGAGG TTCTTGATTTGAGCCACAACTTGCTATCAGGGCAAGTTTCAGGGGTGCTTTCTGGTTTAATATCCATTCAGTCACTGAATATTTCTAGCAATCTGTTCAG GGAAGACTTGTTTGAGCTTGGAGGATATCCAAATCTTGTTGTATTCAACATAAGCAACAATTCATTCACTGGTCCAGTCACTTCTCAAATTTGCAGCTCC TCTAAGGGGATTCAGATTGTTGATTTATCGATGAACCATCTTGTTGGCAATCTCGCAGGCTTGTACAATTGCAGCAAATCCCTCCAGCAACTGCATTTGG ACTCCAACTCACTTTCAGGCTCTCTCCCAGACTTTATATACTCAACGTTAGCTTTGGAGCACTTCTCAATCTCCAACAACAATTTCTCTGGCCAGTTAAG CAAGGAAGTGAGTAAGCTCTCTAGCCTTAAAACCCTGGTTATTTATGGTAACCGGTTTTCAGGCCATATTCCAAATGCATTTGGCAACCTTACACATCTA GAACATTTTGTTGCACATTCAAATATGTTGTCTGGACCATTGCCTTCAACACTGTCATTCTGCTCAAAACTTCACATTCTTGACCTTAGAAACAATTCTT TAACTGGTCCAGTCGATCTTAATTTCGCCGGAATGCCTAGTCTCTGTACGCTTGATCTTGCCGCTAATCACTTTTCTGGGCCGCTTCCAAATTCTTTATC TGATTGCCGTGAATTGGAAATTTTGAGCCTGGCTAAGAATGAATTAACGGGCAAAATCCCTGTGAGTTTTGCTAAGCTCTCATCCCTTTTGTTTCTCTCA TTGTCGAACAATAGTTTAGTGGACTTATCTGGGGCACTAACCGTGCTACAGCATTGCCAAAATCTCTCTACTCTTATCCTCACAAAGAACTTCGTTGGTG AGGAAATTCCCAGGAATGTAAGTGGTTTTCAGAATTTAATGGTCTTAGCATTTGGAAATTGTGCTCTCAAAGGCCATATCCCCGTTTGGCTGTTGAGTTG CAGGAAGTTAGAAGTTCTTGATTTGTCGTGGAATCATTTGGATGGAAATATTCCTTCATGGATTGGCCAGATGGAGAATTTGTTTTACCTGGACCTCTCA AATAACTCCCTCACTGGAGAGATCCCGAAAAGTTTGACTGACCTAAAGAGCCTCATCTCTGCAAACAGCAGTTCTCCCCATCTTACTGCTTCTGCTGGCA TTCCTCTATATGTAAAGCGAAACCAGAGTGCTAGTGGTTTGCCATACAAGCAGGCGTCAAGCTTCCCACCTTCAATATTGTTGAGCAACAATAGAATAAA TGGGACAATTCCACCTGAAGTTGGAAGGTTGAAAGACCTCCATGTCTTAGATTTGAGCAGGAACAACATAACTGGCACTATACCCAACTCCTTTTCGCAA ATGGAAAACTTGGAAATTTTAGATTTTTCATCCAACAATCTGCATGGGTCAATCCCCCCTTCACTCGAGAAGCTGACATTCTTGTCAAAGTTTAGTGTGG CTAATAATCACTTGAGGGGACAAATTCCCACTGGAGGGCAGTTCTATAGCTTTCCTTGCTCAAGCTTTGAGGGTAATCCAGGACTCTGTGGGGTAATAAT TTCTCCTTGTAATGCCATTACTAATACCTTGAAGCCGGGTATTCCATCTGGTTCAGAGAGGAGGTTTGGTCGAAGCAATATTCTCAGCATAACAATCACT ATAGGAGTTGGGCTTGCGCTGGTCCTTGCTATTGTTTTGCATAAGATGTCAAGGAGGAACGTGGGGGATCCCATTGGTGATTTGGAGGAGGAAGGAAGTC TGCCACACAGGTTATCTGAAGCTCTCAGGTCCTCCAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAAGAACTCTCAGTAGCAGATTTGTTGAAATCAAC AAATAACTTCAACCAAGCAAACATCATTGGTTGTGGTGGATTCGGCCTAGTTTACAAAGCCAACTTTCCCAATGATACAAAAGCTGCAATCAAGAGGCTT TCTGGAGATTGTGGCCAGATGGAACGTGAATTTCAAGCTGAAGTGGAAGCTCTGTCGAGGGCTCAACACAAAAACCTTGTTTCTCTTCAAGGTTATTGCA GGCATGGTAATTACAGGTTATTGATTTACTCATACATGGAAAATGGAAGCTTGGATTACTGGCTGCATGAATCTGTTGATGGGACCTCAGTACTTAAATG GGAGGTGAGACTCAAGATAGCCCAAGGAGCAGCTTGTGGGTTAGCATATCTGCACAAAGTTTGCGAACCACATATAGTTCACCGAGATGTGAAATCAAGC AACATACTTCTAGATGAAAATTTTGAAGCTCATTTGGCTGATTTTGGTCTTTCAAGGCTACTTCGACCATACGACACTCATGTAACGACAGATTTGGTTG GCACATTAGGTTATATACCTCCTGAATATAGCCAAACATTGATGGCAACATGCAGGGGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTCAC TGGCAGAAGGCCTGTGGAAGTTTGCAAAGGAAAAAACTGCAGGGATTTGGTTTCTTGGGTGTTTCAGATGAAGTCCGAGAAAAGGGAGGCAGAGATTATA GACCCTGCAATTTGGGACAAAGATCATCAGAAACAGCTGTTTGAAATGCTTGAAATTGCATGTAGGTGCTTAGACCCGGATCCAAGGAAGAGACCCCTTA TCGAAGAAGTTGTTTCGTGGCTTGTATTGGATTCCAAGGTGCTCAACAATGAGCTATAA
AA sequence Show only first row Show all	>Potri.011G116900.1 pacid=42781961 polypeptide=Potri.011G116900.1.p locus=Potri.011G116900 ID=Potri.011G116900.1.v4.1 annot-version=v4.1 MVVVESAPMIFLRCAFFACFLCSSWGLKTIAQSCDPNDSLALKEFAGNLTNGSIITSWSNKADCCQWDGVVCGSNINGSIHRRVTMLILSRKGLQGLIPR SIGHLDQLKSLDLSCNHLQGGLPLELSSLKQMEVLDLSHNLLSGQVSGVLSGLISIQSLNISSNLFREDLFELGGYPNLVVFNISNNSFTGPVTSQICSS SKGIQIVDLSMNHLVGNLAGLYNCSKSLQQLHLDSNSLSGSLPDFIYSTLALEHFSISNNNFSGQLSKEVSKLSSLKTLVIYGNRFSGHIPNAFGNLTHL EHFVAHSNMLSGPLPSTLSFCSKLHILDLRNNSLTGPVDLNFAGMPSLCTLDLAANHFSGPLPNSLSDCRELEILSLAKNELTGKIPVSFAKLSSLLFLS LSNNSLVDLSGALTVLQHCQNLSTLILTKNFVGEEIPRNVSGFQNLMVLAFGNCALKGHIPVWLLSCRKLEVLDLSWNHLDGNIPSWIGQMENLFYLDLS NNSLTGEIPKSLTDLKSLISANSSSPHLTASAGIPLYVKRNQSASGLPYKQASSFPPSILLSNNRINGTIPPEVGRLKDLHVLDLSRNNITGTIPNSFSQ MENLEILDFSSNNLHGSIPPSLEKLTFLSKFSVANNHLRGQIPTGGQFYSFPCSSFEGNPGLCGVIISPCNAITNTLKPGIPSGSERRFGRSNILSITIT IGVGLALVLAIVLHKMSRRNVGDPIGDLEEEGSLPHRLSEALRSSKLVLFQNSDCKELSVADLLKSTNNFNQANIIGCGGFGLVYKANFPNDTKAAIKRL SGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCRHGNYRLLIYSYMENGSLDYWLHESVDGTSVLKWEVRLKIAQGAACGLAYLHKVCEPHIVHRDVKSS NILLDENFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLMATCRGDVYSFGVVLLELLTGRRPVEVCKGKNCRDLVSWVFQMKSEKREAEII DPAIWDKDHQKQLFEMLEIACRCLDPDPRKRPLIEEVVSWLVLDSKVLNNEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.011G116900 [exp]	0	1
AT3G25490			Protein kinase family protein ...		Potri.013G031501 [exp]	12.36	0.8552
AT5G06790			unknown protein		Potri.006G191100 [exp]	18.86	0.8415
					Potri.007G062041 [exp]	23.17	0.8398
ATCG00210		ATCG00210.1, YC...	electron transporter, transfer...		Potri.013G142332 [exp]	28.63	0.8343
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G137077 [exp]	39.50	0.8221
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.013G137688 [exp]	42.52	0.8189
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.005G154674 [exp]	45.00	0.8187
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.011G074301 [exp]	54.68	0.8161
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	61.44	0.8129
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G136466 [exp]	63.74	0.8094

Compare expression of checked genes

Potri.011G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.