Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23560 545 / 0 ALF5 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) AT3G23550 541 / 0 MATE efflux family protein (.1) AT1G73700 323 / 9e-106 MATE efflux family protein (.1) AT5G52450 317 / 2e-103 MATE efflux family protein (.1) AT2G34360 317 / 3e-103 MATE efflux family protein (.1) AT1G15170 302 / 1e-97 MATE efflux family protein (.1) AT1G15150 301 / 4e-97 MATE efflux family protein (.1) AT1G71140 291 / 2e-93 MATE efflux family protein (.1) AT1G66760 289 / 1e-92 MATE efflux family protein (.1.2) AT1G15160 287 / 1e-91 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117300 [exp] 847 / 0 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117400 [exp] 586 / 0 AT3G23550 540 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 347 / 7e-115 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.011G117200 [exp] 340 / 8e-115 AT3G23560 305 / 2e-101 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.006G170900 [exp] 325 / 2e-106 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 325 / 2e-106 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 320 / 3e-104 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 298 / 8e-96 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 296 / 5e-95 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034966 [exp] 570 / 0 AT3G23560 579 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10012961 [exp] 367 / 4e-125 AT3G23560 394 / 3e-136 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10041994 [exp] 312 / 3e-101 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 305 / 2e-98 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 303 / 1e-97 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10019492 [exp] 302 / 3e-97 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10029694 [exp] 299 / 3e-96 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 296 / 1e-95 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10018136 [exp] 292 / 2e-93 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 288 / 5e-92 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.011G117100.1 pacid=42781252 polypeptide=Potri.011G117100.1.p locus=Potri.011G117100 ID=Potri.011G117100.1.v4.1 annot-version=v4.1 ATGTTATCGAACACAAGTTTTGAAGCTGCCCCTTTGTTGGAGCGTAGCAACAGTAGTGTAGAAGAAGGTGAAAACAAGAGGCTGCGGTGGAAGAAGGTGT TAGATGTAGAAGAGGCCAAGAACCAAATCTTGTTTTCACTGCCCATGATTCTCACTAATGTTTTCTACTACTTGATAACTTTGGTCTCTGTCATGTTCGC TGGTCATCTCGGAGAGCTTGAGCTTGCTGGAGCCACCCTGGCTAACTCATGGGCTACGGTCACTGGTTTTGCCTTCATGGTAGGGTTGAGTGGAGCACTT GAAACACTATGTGGTCAAGGATTTGGTGCAAAGATGTACAGAATGCTAGGAATTTATCTTCAAGCATCCTGCATTATATCATTCATCTTCTGTATTACCA TATCGGTTATATGGTTCTATACAGAGCCAATTCTGTTATTACTCCATCAAGATGCTCACGTTTCTATGACTGCTGCTCTCTACATGAAGTATCTCATTCC TGGATTGTTCGCATATGGCATTATGCAGAACATCCTGAGGTTTCTTCAGACACAATCTGTAGTAATGCCCCCTGTGGTATTCTCATTAATACCACTGTGC ATTCATATCGGTATTGCTTATGCTTTGGTTCACTATACAGCTCTTGGGTTCAAGGGAGCTCCACTGGCAGCATCAATTTCACTATGGATATCATTCCTAA TGTTAGCCATTTATGTGATTTGTGCAAAGAAATTTGAGCATACATGGGCTGGATTTTCATTTGAGTCATTTCATTACATTCTTCATGACTTGAAACTAGC CCTGCCTTCTGCTGCAATGGTATGCTTAGAGTATTGGGCCTTTGAGATTCTGGTGTTCCTAGCAGGACTGATGCCAGGCTCAGAAATAAGCACCTCATTG ATCGCAATATGTGTAAACACAGAAACTGTGGCCTACATGTTAACCTATGGTCTCAGTGCCGCTGCAAGCACAAGGGTGTCAAATGAATTAGGAGAGGGCA ATCCAGATAGAGCTAAGAATGCTATGGCTGTGACTCTCAAGCTCTCTGTCCTTCTTGCTCTTCTTGTTGTTCTGGCTCTAGCATTTGGTCACAACATCTG GGCTGGACTTTTCAGTAGCAGCCCTACAATAGCAAAGGAATTTGCATCAATGGCTCCCTTTCTTGCAATCTCGATTGCTCTTGATTCTGTGCAAGGTGTC TTATCAGGGGTGGCCAGAGGTTGTGGCTGGCAGCACTTGGCTGTTTATGCGAACTTGGCAACATTCTATTGCATTGGCATGCCTGTAGCTTGTGTTCTTG GATTCAAGTTAAAGCTATATGTTAAGGGTTTATGGATTGGCTTAATCAGTGGCCTTTGTTGCCAAGCCGGTACCCTCTTGATAATCACAATAAGGACCAA TTGGACTACAACAGATCTGTCTATAACCAAAGATAAAGAGAACCCCATTGCCGTCTAA
AA sequence Show only first row Show all	>Potri.011G117100.1 pacid=42781252 polypeptide=Potri.011G117100.1.p locus=Potri.011G117100 ID=Potri.011G117100.1.v4.1 annot-version=v4.1 MLSNTSFEAAPLLERSNSSVEEGENKRLRWKKVLDVEEAKNQILFSLPMILTNVFYYLITLVSVMFAGHLGELELAGATLANSWATVTGFAFMVGLSGAL ETLCGQGFGAKMYRMLGIYLQASCIISFIFCITISVIWFYTEPILLLLHQDAHVSMTAALYMKYLIPGLFAYGIMQNILRFLQTQSVVMPPVVFSLIPLC IHIGIAYALVHYTALGFKGAPLAASISLWISFLMLAIYVICAKKFEHTWAGFSFESFHYILHDLKLALPSAAMVCLEYWAFEILVFLAGLMPGSEISTSL IAICVNTETVAYMLTYGLSAAASTRVSNELGEGNPDRAKNAMAVTLKLSVLLALLVVLALAFGHNIWAGLFSSSPTIAKEFASMAPFLAISIALDSVQGV LSGVARGCGWQHLAVYANLATFYCIGMPVACVLGFKLKLYVKGLWIGLISGLCCQAGTLLIITIRTNWTTTDLSITKDKENPIAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	0	1
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	2.23	0.9752
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	3.16	0.9715
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	4.47	0.9611
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	6.32	0.9642
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	7.14	0.9687
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.002G237400 [exp]	9.94	0.9512
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	10.58	0.9467
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	10.95	0.9588
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	12.40	0.9579
AT3G48070			RING/U-box superfamily protein...		Potri.015G069400 [exp]	13.63	0.9322

Compare expression of checked genes

Potri.011G117100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.