Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23560 306 / 1e-101 ALF5 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) AT3G23550 304 / 6e-101 MATE efflux family protein (.1) AT5G52450 215 / 3e-66 MATE efflux family protein (.1) AT2G34360 207 / 3e-63 MATE efflux family protein (.1) AT1G73700 196 / 2e-59 MATE efflux family protein (.1) AT1G15150 186 / 2e-55 MATE efflux family protein (.1) AT1G71140 186 / 2e-55 MATE efflux family protein (.1) AT1G15170 184 / 2e-54 MATE efflux family protein (.1) AT1G15160 178 / 3e-52 MATE efflux family protein (.1) AT3G21690 177 / 1e-51 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117400 [exp] 482 / 2e-170 AT3G23550 540 / 0.0 MATE efflux family protein (.1) Potri.011G117100 [exp] 345 / 1e-116 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117300 [exp] 344 / 2e-116 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.010G116700 [exp] 221 / 1e-68 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 219 / 1e-67 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G171240 [exp] 214 / 7e-66 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.006G170900 [exp] 214 / 8e-66 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.014G153100 [exp] 191 / 4e-57 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.017G120400 [exp] 189 / 2e-56 AT2G04100 508 / 3e-178 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034966 [exp] 292 / 3e-96 AT3G23560 579 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10041994 [exp] 201 / 7e-61 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 199 / 7e-61 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10012961 [exp] 196 / 7e-61 AT3G23560 394 / 3e-136 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10019492 [exp] 196 / 6e-59 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10001318 [exp] 187 / 1e-55 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10028540 [exp] 192 / 3e-55 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 181 / 5e-54 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10018134 [exp] 189 / 6e-54 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 182 / 2e-53 AT3G21690 740 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.011G117200.2 pacid=42780732 polypeptide=Potri.011G117200.2.p locus=Potri.011G117200 ID=Potri.011G117200.2.v4.1 annot-version=v4.1 ATGCCCCTCATCCTGCTTTCAGGAATCCCAATGTGCATTCACATCGGGACAGCTTATGCATTGGATCATAAGACAGCTCTTGGTTTCAGAGGAGCTTCGT TGGCGGTTTCAATATCTTTGTGGATTTCAACTCTTGTGTTGGTCATATATGTGATTTATTCAAAGAAATTTAAACATACTTGGGAGGGGTTCTCTTCTGA ATCATTACGTCACATCCCAATAAACTTGAAACTGGCCCTACCCTCTGCTGCAATGGTGTGTCTGGAGTGCTGGGCATTCGAGCTTTTGGTGCTCATAGCA GGAACGATGCCAAACGCAGAACTAACTACATCTGTGATTGCAATGTGTGTGAACACAGAAGACATTGCCTACATGTGTACCTCAGGTCTAAGCGCTACTG TGAGTACAAGGGTGTCTAATGAGTTGGGAGCAGGAAATCCTGATAAAGCTAAACAAACCATGGCTACGACTCTCAAGCTCTCTGTCGTTCTTGCTCTTCT AATTGTTTTAGCACTAGTCATTGGTCATGATATCTGGGCTGGCTTCTTCACTGATGACCTTTCCATTATAAAAGCCTTTGCCTCGATGACACCTTTCCTT GCTATCTCTATCGCACTTGATGCCTTCCAAGTCGTCTTTACAGGGGTAACAAGAGGGTGTGGTTGGCAGAATCTGGCTGTTATTGTAAATGTGGCAACAT TCTTTTGCATTGGAATGCCGATGGCAACCCTCCTCGGATTTAAGTTCAAGCTTTATTCTAAGGGATTATGGATTGGTTTAATCTGCGGTCATGATATCTG GGCTGGCTTCTTCACTGATGACCTTTCCATTATACTTGGCAGGGTATTCTCCGACCCTTTCCAAACCAAAAGACCAATCCTCTTCCTGGTATCGTCGGGC ATCTTAAAATGA
AA sequence Show only first row Show all	>Potri.011G117200.2 pacid=42780732 polypeptide=Potri.011G117200.2.p locus=Potri.011G117200 ID=Potri.011G117200.2.v4.1 annot-version=v4.1 MPLILLSGIPMCIHIGTAYALDHKTALGFRGASLAVSISLWISTLVLVIYVIYSKKFKHTWEGFSSESLRHIPINLKLALPSAAMVCLECWAFELLVLIA GTMPNAELTTSVIAMCVNTEDIAYMCTSGLSATVSTRVSNELGAGNPDKAKQTMATTLKLSVVLALLIVLALVIGHDIWAGFFTDDLSIIKAFASMTPFL AISIALDAFQVVFTGVTRGCGWQNLAVIVNVATFFCIGMPMATLLGFKFKLYSKGLWIGLICGHDIWAGFFTDDLSIILGRVFSDPFQTKRPILFLVSSG ILK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117200 [exp]	0	1
					Potri.002G184550 [exp]	3.74	1.0000
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.003G032400 [exp]	4.89	1.0000
					Potri.011G073141 [exp]	5.65	1.0000
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.012G138800 [exp]	6.92	0.9993	CHSL2
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Potri.019G046201 [exp]	7.41	0.9999
AT3G23550			MATE efflux family protein (.1...		Potri.011G117400 [exp]	7.74	0.9999
AT4G29280		LCR22	low-molecular-weight cysteine-...		Potri.001G044800 [exp]	9.79	0.9998
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	10.19	0.9998
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G022338 [exp]	13.26	0.9994
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023020 [exp]	14.00	0.9992

Compare expression of checked genes

Potri.011G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.