Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HLS3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23560 547 / 0 ALF5 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) AT3G23550 538 / 0 MATE efflux family protein (.1) AT1G73700 322 / 2e-105 MATE efflux family protein (.1) AT2G34360 320 / 2e-104 MATE efflux family protein (.1) AT5G52450 319 / 4e-104 MATE efflux family protein (.1) AT1G15170 303 / 1e-97 MATE efflux family protein (.1) AT1G15150 299 / 4e-96 MATE efflux family protein (.1) AT1G71140 293 / 4e-94 MATE efflux family protein (.1) AT1G66760 290 / 4e-93 MATE efflux family protein (.1.2) AT1G15160 287 / 1e-91 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117100 [exp] 847 / 0 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117400 [exp] 583 / 0 AT3G23550 540 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 347 / 1e-114 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.011G117200 [exp] 340 / 1e-114 AT3G23560 305 / 2e-101 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.006G170900 [exp] 330 / 2e-108 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 330 / 2e-108 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 321 / 1e-104 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 298 / 7e-96 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G093400 [exp] 296 / 2e-95 AT1G71140 482 / 8e-168 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034966 [exp] 570 / 0 AT3G23560 579 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10012961 [exp] 364 / 6e-124 AT3G23560 394 / 3e-136 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10041994 [exp] 313 / 2e-101 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10019492 [exp] 308 / 1e-99 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10009132 [exp] 306 / 4e-99 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10029668 [exp] 298 / 1e-96 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10042732 [exp] 300 / 2e-96 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 296 / 6e-95 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 287 / 2e-91 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 285 / 8e-91 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.011G117300.1 pacid=42780371 polypeptide=Potri.011G117300.1.p locus=Potri.011G117300 ID=Potri.011G117300.1.v4.1 annot-version=v4.1 ATGTTATCGAACACAAGTTTTGAAGCTGCCCCTTTGTTGGAGCGTAGCATCAGTAGTGTAGAAGAAGGTGAGAAGAGGAGGCTGCGGTGGAAGAAGGTGT TAGATGTAGAAGAGGCCAAGAACCAAATCTTGTTTTCACTGCCCATGATTCTCACTAATGTTTTCTACTACTTGATAACTTTGGTCTCTGTCATGTTCGC TGGTCATCTCGGAGAGCTTGAGCTTGCTGGAGCCACCCTGGCTAACTCATGGGCTACGGTCACTGGTTTTGCCTTCATGGTAGGGTTGAGTGGAGCACTT GAAACACTATGTGGTCAAGGATTTGGTGCAAAGATGTACAGAATGCTAGGAATTTATCTTCAAGCATCCTGCATTATATCATTCATCTTCTGTATTACCA TATCGGTTATATGGTTCTATACAGAGCCAATTCTGTTATTACTCCATCAAGATGCTCACGTTTCTATGACTGCTGCTCTCTACATGAAGTATCTCATTCC TGGATTGTTCGCATATGGCATTATGCAGAACATCCTGAGGTTTCTTCAGACACAATCTGTAGTAATGCCCCCTGTGGTATTCTCATTAGTACCACTGTGC ATTCATATCGGTATTGCTTATGCTTTGGTTCACTATACAGCTCTTGGGTTCAAGGGAGCTCCACTGGCAGCATCAATTTCACTATGGATATCAGTCCTAA TGTTAGCCATTTATGTGATTTGTGCAAAGAAATTTGAGCATACATGGGGTGGGTTTTCATTTGAGTCATTTCATTACATTCTTCATGACTTGAAACTAGC CCTGCCTTCTGCTGCAATGGTATGCTTAGAGTATTGGGCCTTTGAGATTCTGGTGTTCCTAGCAGGACTGATGCCAAGCTCAGAAATAAGCACCTCATTG ATCGCAATATGTGTAAACACAGAAACTGTGGCCTACATGTTAACCTATGGTCTCAGTGCCGCTGCAAGCACAAGGGTGTCAAATGAATTAGGAGAGGGCA ATCCAGAGAGAGCTAAGAATGCTATGGCTGTGACTCTCAAGCTCTCTGTCCTTCTTGCTCTTCTTGTTGTTCTGGCTCTAGCATTTGGTCACAACATCTG GGCTGGACTTTTCAGTAGCAGCCCTACAATAGCAAAGGAATTTGCATCAATGGCTCCCTTTCTTGCAATTTCGATTACTCTTGATTCTGTGCAAGGTGTC TTCTCAGGGGTGGCCAGGGGTTGTGGCTGGCAGCACTTGGCTGTTTATGCGAACTTGGCAACATTCTACTGTATTGGCATGCCTGTAGCTTGTGTTCTTG GATTCAAGTTAAAGCTATATGTTAAGGGTTTATGGATTGGCTTAATCAGTGGCCTTTGTTGCCAAGCCGGTACCCTCTTGTTAATCACAATAAGGACCAA TTGGACTGCAACAGATCTGTCTATAACCAAAGAGAAAGAGAACCCCATTGTCGTCTAA
AA sequence Show only first row Show all	>Potri.011G117300.1 pacid=42780371 polypeptide=Potri.011G117300.1.p locus=Potri.011G117300 ID=Potri.011G117300.1.v4.1 annot-version=v4.1 MLSNTSFEAAPLLERSISSVEEGEKRRLRWKKVLDVEEAKNQILFSLPMILTNVFYYLITLVSVMFAGHLGELELAGATLANSWATVTGFAFMVGLSGAL ETLCGQGFGAKMYRMLGIYLQASCIISFIFCITISVIWFYTEPILLLLHQDAHVSMTAALYMKYLIPGLFAYGIMQNILRFLQTQSVVMPPVVFSLVPLC IHIGIAYALVHYTALGFKGAPLAASISLWISVLMLAIYVICAKKFEHTWGGFSFESFHYILHDLKLALPSAAMVCLEYWAFEILVFLAGLMPSSEISTSL IAICVNTETVAYMLTYGLSAAASTRVSNELGEGNPERAKNAMAVTLKLSVLLALLVVLALAFGHNIWAGLFSSSPTIAKEFASMAPFLAISITLDSVQGV FSGVARGCGWQHLAVYANLATFYCIGMPVACVLGFKLKLYVKGLWIGLISGLCCQAGTLLLITIRTNWTATDLSITKEKENPIVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117300 [exp]	0	1	Pt-HLS3.1
AT4G38090			Ribosomal protein S5 domain 2-...		Potri.007G010400 [exp]	2.00	0.8947
AT5G08340			Nucleotidylyl transferase supe...		Potri.007G075500 [exp]	6.48	0.9205
AT5G62950			RNA polymerase II, Rpb4, core ...		Potri.005G067600 [exp]	9.74	0.8614
AT1G18440			Peptidyl-tRNA hydrolase family...		Potri.012G061100 [exp]	11.40	0.8350
AT5G57060			unknown protein		Potri.003G044400 [exp]	11.48	0.8515
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	14.69	0.8736
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G171300 [exp]	15.81	0.8563
AT5G04710			Zn-dependent exopeptidases sup...		Potri.008G021700 [exp]	17.14	0.8775
AT3G12130	C3HZnF		KH domain-containing protein /...		Potri.006G191900 [exp]	17.29	0.8666
AT4G28570			Long-chain fatty alcohol dehyd...		Potri.006G210150 [exp]	18.81	0.8376

Compare expression of checked genes

Potri.011G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.