Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23550 540 / 0 MATE efflux family protein (.1) AT3G23560 539 / 0 ALF5 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) AT5G52450 348 / 7e-115 MATE efflux family protein (.1) AT1G73700 340 / 5e-112 MATE efflux family protein (.1) AT2G34360 337 / 6e-111 MATE efflux family protein (.1) AT1G15150 308 / 1e-99 MATE efflux family protein (.1) AT1G66760 304 / 5e-98 MATE efflux family protein (.1.2) AT1G71140 303 / 1e-97 MATE efflux family protein (.1) AT3G21690 301 / 2e-96 MATE efflux family protein (.1) AT1G15170 298 / 1e-95 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117100 [exp] 616 / 0 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117300 [exp] 615 / 0 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117200 [exp] 476 / 5e-168 AT3G23560 305 / 2e-101 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.006G170900 [exp] 368 / 6e-123 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 368 / 7e-123 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.012G051900 [exp] 360 / 2e-119 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 357 / 1e-118 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 310 / 8e-100 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 304 / 1e-97 AT3G21690 704 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034966 [exp] 555 / 0 AT3G23560 579 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10012961 [exp] 370 / 6e-126 AT3G23560 394 / 3e-136 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10019492 [exp] 341 / 3e-112 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10041994 [exp] 331 / 3e-108 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 330 / 5e-108 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10027169 [exp] 308 / 5e-99 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 300 / 4e-97 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10018136 [exp] 301 / 2e-96 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 300 / 2e-96 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018134 [exp] 306 / 4e-94 AT1G15170 542 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.011G117400.2 pacid=42781895 polypeptide=Potri.011G117400.2.p locus=Potri.011G117400 ID=Potri.011G117400.2.v4.1 annot-version=v4.1 ATGCCAAAAACAAGTTTAGATACTGCTTTACCCTTGTTGCAGGCTTATGATCATCATTGTGAAGATCAAAATGGCGAAGGAAGATGCTGGTGGATCAAAC TATTGGATGTCGAAGAAGGCAAAGGCCAAGTCTTGTTTTCACTGCCCATGATCCTTACTAATGCTTTCTACTATCTAATAACTTTGGTTTCTGTCATGTT TGCCGGTCACCTTGGTCAGCTTGAGCTTGCCGGCGCCACTCTTGGGAATTCATGGTGCACTGTCACTGGCATTGCTTTCATGACTGGATTAAGTGGAGCA CTTGAGACACTTTGTGGTCAAGCATTTGGTGCAAAACTATACAGAACATTAGGAATTCATCTTCAAGCTTCTTGCATCATATCCTTTCTGTGCTCCATAA TCATAAGCATTATCTGGCTTTACACAGAGCCCTTACTCATCTTCCTCCGTCAAGATCCTCAAATTTCAAAAGCTGCTGCTCTTTACTTAAAGTATTTGAT TCCAGGCATATTTGCATTTGGATTCCTTCAAAACATCTTGAGGTTTCTTCAGACACAATCTGTTGTCATGCCCCTCATCCTGCTTTCAGGAATCCCAATG TGCATTCACATCGGTACAGCTTATGCATTGGTTCATAAGACAGCTCTTGGTTTCAGAGGAGCTTCGTTGGCGGTTTCAATATCTTTGTGGATTTCAACTC TTGTGTTGGTCATATATGTGATTTATTCAAAGAAATTTAAACATACTTGGGAGGGGTTTTCTTCTGAATCATTACGTCACATCCCAATAAACTTGAAACT GGCCCTGCCCTCTGCTGCAATGGTGTGTTTGGAGTACTGGGCATTCGAGCTTTTGGTGCTCATAGCAGGAGTGATGCCAAACGCAGAACTAACTACATCT GTGATTGCAATGTGTGTGAACACAGAAGACATTGCCTACATGTGTACCTCAGGTCTAAGCGCTACTGTGAGTACAAGGGTGTCTAATGAGTTGGGAGCAG GAAATCCTGATAAAGCTAAACAAGCCATGGCTACGACTCTCAAGCTCTCTGTCCTTCTTGCTCTTCTAATTGTTTTAGCACTAGCCACTGGTCATGATAT CTGGGCTGGCTTCTTCACTGATGACCTTTCCATTATAAAAGCCTTTGCCTCGATGACACCTTTCCTTGCTATCTCTATCGCACTTGATGCCTTCCAAGTC GTCTTTACAGGGGTAACAAGAGGGTGTGGTTGGCAGAATCTGGCTGTTATTGTAAATGTAGCAACATTCTTTTGCATTGGAATGCCGATGGCAACCCTCC TCGGATTTAAGTTTAAGCTTTATTCTAAGGGATTATGGATTGGTTTAATCTGCGGTCTGTCATGCCAAACCTGCACTCTGTTGTTGATTACACTGCGTAC AAAATGGACTAGAATGGATCTCTCAGAACCAGAGGAAAATGCAGGGTATTCTCCAACCCTTTCCAAACCAGAAGACCAATCCTCTTCCTGGTATCGTCGG GCATCTTAA
AA sequence Show only first row Show all	>Potri.011G117400.2 pacid=42781895 polypeptide=Potri.011G117400.2.p locus=Potri.011G117400 ID=Potri.011G117400.2.v4.1 annot-version=v4.1 MPKTSLDTALPLLQAYDHHCEDQNGEGRCWWIKLLDVEEGKGQVLFSLPMILTNAFYYLITLVSVMFAGHLGQLELAGATLGNSWCTVTGIAFMTGLSGA LETLCGQAFGAKLYRTLGIHLQASCIISFLCSIIISIIWLYTEPLLIFLRQDPQISKAAALYLKYLIPGIFAFGFLQNILRFLQTQSVVMPLILLSGIPM CIHIGTAYALVHKTALGFRGASLAVSISLWISTLVLVIYVIYSKKFKHTWEGFSSESLRHIPINLKLALPSAAMVCLEYWAFELLVLIAGVMPNAELTTS VIAMCVNTEDIAYMCTSGLSATVSTRVSNELGAGNPDKAKQAMATTLKLSVLLALLIVLALATGHDIWAGFFTDDLSIIKAFASMTPFLAISIALDAFQV VFTGVTRGCGWQNLAVIVNVATFFCIGMPMATLLGFKFKLYSKGLWIGLICGLSCQTCTLLLITLRTKWTRMDLSEPEENAGYSPTLSKPEDQSSSWYRR AS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23550			MATE efflux family protein (.1...		Potri.011G117400 [exp]	0	1
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	3.31	0.9999
					Potri.002G184550 [exp]	5.47	0.9999
					Potri.011G073141 [exp]	7.07	0.9999
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117200 [exp]	7.74	0.9999
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.003G032400 [exp]	8.94	0.9999
AT4G35160			O-methyltransferase family pro...		Potri.013G136300 [exp]	11.95	0.9998
AT4G35160			O-methyltransferase family pro...		Potri.013G141301 [exp]	12.40	0.9998
AT4G35160			O-methyltransferase family pro...		Potri.013G143800 [exp]	12.84	0.9998
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Potri.019G046201 [exp]	13.26	0.9998
AT4G29280		LCR22	low-molecular-weight cysteine-...		Potri.001G044800 [exp]	13.67	0.9997

Compare expression of checked genes

Potri.011G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.