Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64980 448 / 1e-161 Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042500 [exp] 479 / 6e-174 AT1G64980 447 / 2e-161 Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024531 [exp] 433 / 2e-155 AT1G64980 443 / 2e-159 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10005005 [exp] 208 / 7e-69 AT1G64980 218 / 6e-73 Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G117500.1 pacid=42781480 polypeptide=Potri.011G117500.1.p locus=Potri.011G117500 ID=Potri.011G117500.1.v4.1 annot-version=v4.1 ATGACCATGACCGTGACCAATGGGGAGGTACATCCAGTGACTGCCAATGGAGGCTTTACAATTGACAAGCCCTTCAAGATCTTTGTGGGTTACGATCCAC GTGAAGATATTGCCTATGAGGTTTGTCACCATTCTATTTTGAAACGATCCTCGATCCCTGTTGAGATCACCCCCATTGTGCAGTCAGATCTTAGAACGAA TGGCTTGTATTGGCGCGAGAGAGGCCAGCTTGAGAGCACAGAGTTCTCTTTTACTCGTTTCTTGACCCCGCATTTGGCTAACTATGATGGTTGGGCAATG TTTGTTGATTGTGATTTCCTCTACTTAGCTGACATCAAGGAATTGAGGGATTTGATTGATGACAAGTATGCCATCATGTGTGTGCAACATGACTATACTC CAAAAGAGGCCACAAAAATGGATGGTGCGGTGCAAACCGTGTATCCAAGGAAGAATTGGTCTTCCATGGTGTTGTACAATTGTGGGCACCCGAAGAACAA GGTTCTGACACCTGAGGTTGTGAATACCCAAACCGGTGCTTTCCTTCATAGGTTTCAGTGGCTTGAGGACGAAGAAATCGGTTCCATCCCATTTGTGTGG AATTTCCTGGAGGGTCATAACAAAGTTGTGGAAGGTGACACAACAACATTTCCTAAAGCAATACATTATACTCGTGGTGGCCCATGGTTTGAGGCATGGA AGAATTGTGAGTTTGCAGAATTGTGGTTGAAAGAGAAGGATGAGTGCGTGAAGGAAGAGAAGAAATAA
AA sequence Show only first row Show all	>Potri.011G117500.1 pacid=42781480 polypeptide=Potri.011G117500.1.p locus=Potri.011G117500 ID=Potri.011G117500.1.v4.1 annot-version=v4.1 MTMTVTNGEVHPVTANGGFTIDKPFKIFVGYDPREDIAYEVCHHSILKRSSIPVEITPIVQSDLRTNGLYWRERGQLESTEFSFTRFLTPHLANYDGWAM FVDCDFLYLADIKELRDLIDDKYAIMCVQHDYTPKEATKMDGAVQTVYPRKNWSSMVLYNCGHPKNKVLTPEVVNTQTGAFLHRFQWLEDEEIGSIPFVW NFLEGHNKVVEGDTTTFPKAIHYTRGGPWFEAWKNCEFAELWLKEKDECVKEEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64980			Nucleotide-diphospho-sugar tra...		Potri.011G117500 [exp]	0	1
AT4G20760			NAD(P)-binding Rossmann-fold s...		Potri.011G157300 [exp]	1.00	0.9104
AT1G09645			unknown protein		Potri.003G005400 [exp]	7.48	0.8739
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.010G216800 [exp]	13.07	0.8971
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Potri.008G132500 [exp]	20.49	0.8911
AT2G34590			Transketolase family protein (...		Potri.004G129800 [exp]	20.49	0.8709	Pt-PDH.2
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Potri.014G174400 [exp]	21.49	0.8807
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.012G100400 [exp]	21.63	0.8912
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	22.22	0.8975
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.013G124400 [exp]	22.64	0.8824
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.001G405500 [exp]	23.04	0.8315

Compare expression of checked genes

Potri.011G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.