Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP72D1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14620 479 / 7e-166 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14640 475 / 4e-164 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14610 465 / 2e-160 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14690 464 / 8e-160 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14680 459 / 7e-158 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14660 457 / 3e-157 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14630 448 / 1e-153 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14650 443 / 8e-152 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT2G26710 413 / 8e-140 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G17060 382 / 2e-128 SHK1, CHI2, SOB7, CYP72C1 SUPPRESSOR OF PHYB-4 7, SHRINK 1, CHIBI 2, cytochrome p450 72c1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117700 [exp] 644 / 0 AT3G14620 368 / 9e-125 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G098800 [exp] 495 / 5e-172 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 491 / 1e-170 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 489 / 1e-169 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 488 / 2e-169 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 488 / 3e-169 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 479 / 1e-165 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101250 [exp] 423 / 7e-144 AT3G14690 568 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.018G070900 [exp] 417 / 2e-141 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042487 [exp] 454 / 8e-156 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 445 / 3e-152 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 444 / 7e-152 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026177 [exp] 396 / 2e-133 AT3G14690 514 / 6e-180 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10033044 [exp] 394 / 6e-132 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 383 / 5e-128 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10017771 [exp] 363 / 2e-120 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 362 / 6e-120 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10010821 [exp] 360 / 3e-119 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10017775 [exp] 363 / 7e-119 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.011G117600.1 pacid=42782244 polypeptide=Potri.011G117600.1.p locus=Potri.011G117600 ID=Potri.011G117600.1.v4.1 annot-version=v4.1 ATGGAAGATTTTATCTTCAGAGGGTTTCTGTCCTCTTCTTTACTTCTATCTCTCTATGTTGTGTTTAGAGTTGCTCACACTTTTTGGCTGAAGCCGAAAA GCCAAGAGAAGCGTTTGAGGAAGCAAGGGATCAGAGGCACTTCTTACAAGATTTTGAATGGTGATATGAAAGAGTTTGCAAGGTCTTCTAAAGAAGCAAG GTCCAGGCCCCTTGCTCTAAATCAAGAAATTGCACCACGTGTCTTTCCATTCTTTTATAAAATGGTGCAAATTTACGGAAAGGTCTCCCTGTGTTGGATG GGGACAAGACCTAGCCTGCTATTAGCTGATCCAGAGCTGGTGAGGTTGGTGTTAACAGACACGAGTGGTCACATTATAAAGCCACCGCGAAATGCCCTTG TGGGTCTATTACAACTGGGAGTCTCAACCTTGGAAGGAGACAAATGGGCCAAACGCAGAAGGTTGATGACACCTGCCTTCCACGTTGAGAGATTAAGGGG GATGATCCCAGCATTTTCAGCCTGCTGTTGTGATCTGGTTCAGCGATGGAAGAAATTAGCAGGTCCTCAGGGATCATGTGAATTGGATGTTGCAAGCGAA TTTAATATTCTTGCAAGTGATGTTATAGCTCGAGCAGCCTTTGGAAGCAGCTATGAAGAGGGAAAGAGAATATTTGATCTTCAAAAAGATCAAGTCACTT TGGTCCTTGAAGCTTTTTATTCCATTTACTTCCCTGGTTTGAGATTCATACCTTCTAAAAAGAACAAGAAGAGATACAGCATAGACAAAGAGATAAAAGC AGCATTGAGAAATATTATCCATAAGAAGGAGCAGGCCATGCAAAATGGAGACTTAGGCGATGCTGACTTGCTAGGCTTGCTTCTAAAGGGCAGAGATGAT GCTGATAATGACATGAAAATTGAAGATGTAATCGAGGAATGCAAGTTGTTCTTCTTTGCAGGCCAAGAGACCACAGCAAACTTACTCACTTGGACATTGG TAGTTCTATCTATGCATCCAGACTGGCAAGAGAAAGCAAGAGAAGAAGTTTTGCAGATTTGTGGGAAGAGAACACCTGATACCGATAGTATAAAACAACT CAGAATTGTCTCAATGATCTTAAACGAGGTACTAAGACTATATCCACCTGTGAATCTTCTGTATCGACATACTCTAAAGGAAACAAGCATTCGAGGAATG TCCATTCCAGCTGGGGTAGACCTCCTGTTACCATTCTTGTTTCTTCACTATGATCCTGAGTATTGGGGAGACAACGCAGAAGAATTCAAACCAGAGAGAT TCTCTGAAGGAGTTTCAAAAGCATCAAAGGATGAAATTGCATTTTACCCTTTTGGTTGGGGCCCTAGATTTTGTCTAGGCCAAAACTTTGCCTTGACTGA AGCAAAGATGGCTCTTACTATGATTCTACAAAATTTCTGGTTTGAGCTTTCACCCTCTTACACGCATGCTCCTGGTAATGTCATAACTCTTCAACCACAA CATGGAGCTCCTATTATACTACACCAATTATAA
AA sequence Show only first row Show all	>Potri.011G117600.1 pacid=42782244 polypeptide=Potri.011G117600.1.p locus=Potri.011G117600 ID=Potri.011G117600.1.v4.1 annot-version=v4.1 MEDFIFRGFLSSSLLLSLYVVFRVAHTFWLKPKSQEKRLRKQGIRGTSYKILNGDMKEFARSSKEARSRPLALNQEIAPRVFPFFYKMVQIYGKVSLCWM GTRPSLLLADPELVRLVLTDTSGHIIKPPRNALVGLLQLGVSTLEGDKWAKRRRLMTPAFHVERLRGMIPAFSACCCDLVQRWKKLAGPQGSCELDVASE FNILASDVIARAAFGSSYEEGKRIFDLQKDQVTLVLEAFYSIYFPGLRFIPSKKNKKRYSIDKEIKAALRNIIHKKEQAMQNGDLGDADLLGLLLKGRDD ADNDMKIEDVIEECKLFFFAGQETTANLLTWTLVVLSMHPDWQEKAREEVLQICGKRTPDTDSIKQLRIVSMILNEVLRLYPPVNLLYRHTLKETSIRGM SIPAGVDLLLPFLFLHYDPEYWGDNAEEFKPERFSEGVSKASKDEIAFYPFGWGPRFCLGQNFALTEAKMALTMILQNFWFELSPSYTHAPGNVITLQPQ HGAPIILHQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117600 [exp]	0	1	CYP72D1
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Potri.017G144421 [exp]	3.31	0.6904
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G073000 [exp]	17.91	0.6618
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.010G250800 [exp]	21.16	0.6245	ACA9.1
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	23.64	0.5979
AT1G50180			NB-ARC domain-containing disea...		Potri.018G138500 [exp]	24.49	0.6217
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.008G162600 [exp]	28.14	0.5662
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	31.46	0.6003	Pt-LECRK7.1
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G061800 [exp]	32.61	0.5838	COL3.2
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G190200 [exp]	33.94	0.5794
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	35.41	0.5434

Compare expression of checked genes

Potri.011G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.