Plant FIBer expression Database

Potri.011G118000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53860 695 / 0 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G398900
[exp]
817 / 0 AT5G53860 672 / 0.0 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009197
[exp]
621 / 0 AT5G53860 593 / 0.0 EMBRYO DEFECTIVE 64, embryo defective 2737 (.1.2.3.4.5)
PFAM info
Representative CDS sequence
>Potri.011G118000.1 pacid=42780641 polypeptide=Potri.011G118000.1.p locus=Potri.011G118000 ID=Potri.011G118000.1.v4.1 annot-version=v4.1
ATGTCGAGAGGAACAGACCGTCTGATAAAGAGTGTGAAGCAATTCGCTGACTTACAGTACAAGCTCTTCACTGCTCGTTATGGCCAACAAGTGATTGATA
TTTTCGAGTTCCCAATAAAACTTGTCTTGTCTCCTTTCACTCTTGCTTTTGACATTGCTGGCTCCGCTCCTCGTGGCTTTGGTGTCCCTGAGCTCGTCTC
CAAGCTCTCCTATGCTTCTATCTTTGTTGTTGCTACTTTGGGGACCTATGATATTGCATTGGAGATGGGAAAGAAGGTGATATGTCAAAGGAATTGTCAG
ACTTGCAATGGATGGCAGGCACTGCGGTGTCATATGTGCAAAGGAGCAGGGAAGGTGCATTACCAAGTTAAAAATTACACCTTGAGAAGTGGTGAGAAGG
CTACAGCTGAATGTATTGCAGATGCCATTGCTGACAATCGAGCTGAGCTGGTGCACCTTCCCTCCTCCATGGATCTTAACATGCCTTTGCCATCTAAAGA
CTGTCCAACTTGTGATGGAACGGGTGTAATGAGCTGCCCTGAATGCAAAAACAAATTACAAGTCAGGATCTCTGCGGACGATATAATGGAGCCCCCATGG
CAAGCCTACAATGTCTTGAGCAAGATGGAATATCCTTATGAGCATATAGTTGATAGCATGAAAGATCCCAGCATTGCTGCATTTTGGTTGTTTTCCTTTC
CTGAGATTATGGGTGGCTTCAACTATGATGGTGATATCAAGCAGAAAATTTGGTGGCAGTACAAGGAATCAATGAGATACGATCAACTACGAGATATGGT
AGCCAAGCGAAAACCTGGTTGGGAGCACTTGCAGGAAGCCCTGATCTCAATAGATCCTATTCGTGCCAGGGACGATCCTATTGTTGTGAAAAATGTCCCA
TACTACAAAGCCAAGAAGGCATTGGAGGCAGAGGTCATGAAACTTGATCCACCATCTCGGCCACAGAATTGGGGCGAGCTGGATCTTCCACTAAATGTAT
CATCATGGAGCGAGGAGGATCTTAAAAAACCAGAAAAATTCTATGAGATGACTGTTCTTCTTAATGCACAAAGAGAAATTGCTGATAAAATTTTGGATGC
ACAATGGGAAACTAAATGGCGTCAAGAAAAGTTGAACGAACTGTTGGAAGAGAAGGTGCGGCCATACATTCAGAACATCAACAGTGGTGCCCTTCCCCGT
CCTATCATAATACAACCACAGAATCAGGATAAAAAGAGGAGGCAGAGGAGATGGTGGTTTTTCTGA
AA sequence
>Potri.011G118000.1 pacid=42780641 polypeptide=Potri.011G118000.1.p locus=Potri.011G118000 ID=Potri.011G118000.1.v4.1 annot-version=v4.1
MSRGTDRLIKSVKQFADLQYKLFTARYGQQVIDIFEFPIKLVLSPFTLAFDIAGSAPRGFGVPELVSKLSYASIFVVATLGTYDIALEMGKKVICQRNCQ
TCNGWQALRCHMCKGAGKVHYQVKNYTLRSGEKATAECIADAIADNRAELVHLPSSMDLNMPLPSKDCPTCDGTGVMSCPECKNKLQVRISADDIMEPPW
QAYNVLSKMEYPYEHIVDSMKDPSIAAFWLFSFPEIMGGFNYDGDIKQKIWWQYKESMRYDQLRDMVAKRKPGWEHLQEALISIDPIRARDDPIVVKNVP
YYKAKKALEAEVMKLDPPSRPQNWGELDLPLNVSSWSEEDLKKPEKFYEMTVLLNAQREIADKILDAQWETKWRQEKLNELLEEKVRPYIQNINSGALPR
PIIIQPQNQDKKRRQRRWWFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53860 EMB64, EMB2737 EMBRYO DEFECTIVE 64, embryo de... Potri.011G118000
[exp]
0 1
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.013G032600
[exp]
1.41 0.8756
AT5G24650 Mitochondrial import inner mem... Potri.012G004600
[exp]
1.73 0.8573
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.010G206900
[exp]
5.29 0.8226
AT3G01740 Mitochondrial ribosomal protei... Potri.001G335600
[exp]
9.79 0.8137
AT1G18335 Acyl-CoA N-acyltransferases (N... Potri.012G041400
[exp]
10.72 0.8034
AT4G04955 ATALN allantoinase (.1) Potri.004G041800
[exp]
15.49 0.7858
AT3G08890 Protein of unknown function, D... Potri.006G104000
[exp]
16.43 0.7510
AT3G53440 Homeodomain-like superfamily p... Potri.006G280800
[exp]
19.07 0.8003
AT1G23180 ARM repeat superfamily protein... Potri.010G110200
[exp]
19.39 0.8210
AT2G28605 Photosystem II reaction center... Potri.005G068500
[exp]
21.21 0.8158

Potri.011G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.