Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53850 425 / 1e-147 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399000 [exp] 531 / 0 AT5G53850 792 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009198 [exp] 471 / 1e-165 AT5G53850 766 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10005542 [exp] 443 / 3e-157 AT5G53850 402 / 1e-138 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10041928 [exp] 429 / 2e-151 AT5G53850 384 / 5e-131 haloacid dehalogenase-like hydrolase family protein (.1.2.3) Lus10015966 [exp] 275 / 2e-93 AT5G53850 223 / 5e-72 haloacid dehalogenase-like hydrolase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.011G118132.2 pacid=42781740 polypeptide=Potri.011G118132.2.p locus=Potri.011G118132 ID=Potri.011G118132.2.v4.1 annot-version=v4.1 ATGATCAATTCTTCTTTTTTATCTCACTGCTGTTTGGAGCTGTACTTAAATTGGTTTCAAATCTTTCAGGCTGAATGTTATCACTATCTGTTTGATGCTG CTATAAAACTTCATCAGATGGGCCTAGATTGGTCCACCCCAGACCATGGCCCCATTCAAAAGGTCAAAGGAGTTTTAGGTTGTAATGGAAACGTAAAAAT GGTGGTTAAGGCAGGCATGAACAATTCAGATAATGGAACTGGACCATTGCCACGTTGCATTGTTCTTGACATTGAGGGAACTACTACTCCAATAACATTT GTTGCTGATGTTCTCTTTCCATATGCCCGTGATAATGTTGGGAGGCATCTGTCTGCAACATACGAGACTGCAGAAACTCATGATGATATAAAGTTGTTGC GCGCACAAGTTGGAGATGACTTGAAACAAGGTATTGATGGCGCTGTTCCTATTCCAACAGATGATGCTGGGAAAGAGGAGGTAATTGCAGCTTTGGTTGC TAACGTGGAAGAAATGATAAAAGCAGATCGAAAGATCACTGCATTAAAACAATTACAAGGTCATATATGGAGAACTGGATATGAGAATAATGAACTGGAA GGGGTAGTTTATGGTGACGTTCCAGAAGCATTGGAGAAGTGGCATGCTTTGGGCATAAAGGTGTATATATATTCTAGTGGAAGCAGGCTGGCGCAAAGAC TTACATTTGGAAAGACAAACTATGGAGACCTGATAAAATATTTGTCTGGATTCTTTGACACCAAAGTGGGGAATAAGAAAGAGACACACAGTTATATTGA AATCTCAGAGTCACTTGGAGTTAATAAACCATCTGACATTTTGTTTCTGATGGATGTCTTTCAAGAAGCTGTAGCTGCAAAAGCAGCAGGTTTGGAGGTG ATGATTTCTATCCAACCTGGAAACGCGCCTCTTCCAGATGATCAAAGTTTCAAGACGATCACCTCTTTCGCTGAAATCTGA
AA sequence Show only first row Show all	>Potri.011G118132.2 pacid=42781740 polypeptide=Potri.011G118132.2.p locus=Potri.011G118132 ID=Potri.011G118132.2.v4.1 annot-version=v4.1 MINSSFLSHCCLELYLNWFQIFQAECYHYLFDAAIKLHQMGLDWSTPDHGPIQKVKGVLGCNGNVKMVVKAGMNNSDNGTGPLPRCIVLDIEGTTTPITF VADVLFPYARDNVGRHLSATYETAETHDDIKLLRAQVGDDLKQGIDGAVPIPTDDAGKEEVIAALVANVEEMIKADRKITALKQLQGHIWRTGYENNELE GVVYGDVPEALEKWHALGIKVYIYSSGSRLAQRLTFGKTNYGDLIKYLSGFFDTKVGNKKETHSYIEISESLGVNKPSDILFLMDVFQEAVAAKAAGLEV MISIQPGNAPLPDDQSFKTITSFAEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53850			haloacid dehalogenase-like hyd...		Potri.011G118132 [exp]	0	1
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Potri.008G095700 [exp]	3.74	0.6979
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.002G048500 [exp]	5.91	0.7255
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Potri.008G068500 [exp]	6.63	0.7618
AT5G63460			SAP domain-containing protein ...		Potri.015G094600 [exp]	8.48	0.7190
AT3G10440			Shugoshin C terminus (.1)		Potri.008G032600 [exp]	10.48	0.7454
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	15.55	0.7095	Pt-HB1.7
					Potri.001G060300 [exp]	17.88	0.6417
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	20.19	0.6786	PIN7,Pt-PIN1.2
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	23.23	0.7128
AT5G19690		STT3A	staurosporin and temperature s...		Potri.006G163566 [exp]	23.30	0.7378

Compare expression of checked genes

Potri.011G118132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.