Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53140 1263 / 0 DRP5A Dynamin related protein 5A (.1) AT3G19720 207 / 2e-56 DRP5B, ARC5 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G14830 92 / 6e-19 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 91 / 1e-18 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT3G61760 89 / 4e-18 ADL1B DYNAMIN-like 1B (.1) AT2G44590 89 / 4e-18 ADL1D DYNAMIN-like 1D (.1.2.3) AT5G42080 85 / 5e-17 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G60530 82 / 1e-16 DRP4A Dynamin related protein 4A (.1) AT1G60500 84 / 2e-16 DRP4C Dynamin related protein 4C (.1) AT4G33650 76 / 1e-13 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254900 [exp] 218 / 6e-60 AT3G19720 1209 / 0.0 Dynamin related protein 5B, ACCUMULATION AND REPLICATION OF CHLOROPLAST 5, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G105900 [exp] 97 / 1e-20 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.003G141000 [exp] 90 / 2e-18 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 89 / 5e-18 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.014G043600 [exp] 88 / 1e-17 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 86 / 5e-17 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 86 / 5e-17 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.003G024800 [exp] 84 / 8e-17 AT1G60500 607 / 0.0 Dynamin related protein 4C (.1) Potri.001G090600 [exp] 85 / 9e-17 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002141 [exp] 1232 / 0 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10008749 [exp] 566 / 0 AT1G53140 562 / 0.0 Dynamin related protein 5A (.1) Lus10040117 [exp] 91 / 2e-18 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10029001 [exp] 89 / 5e-18 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019170 [exp] 89 / 5e-18 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10003873 [exp] 84 / 1e-16 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 84 / 3e-16 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10001820 [exp] 82 / 8e-16 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10024334 [exp] 80 / 4e-15 AT1G60500 771 / 0.0 Dynamin related protein 4C (.1) Lus10023073 [exp] 79 / 7e-15 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family
Representative CDS sequence Show only first row Show all	>Potri.011G118500.1 pacid=42781529 polypeptide=Potri.011G118500.1.p locus=Potri.011G118500 ID=Potri.011G118500.1.v4.1 annot-version=v4.1 ATGGCAACAACAAACGCGCACTTAACCACACCTACAAAAACTCCATCAACGAATTCGTCTTCCCTTTCAAGAAAACACCAAAATAACCCCTCTAACTCTC GGTTCGAAGCGTATAATCGGTTGCAAGCAGCAGCAGTTGCTTTCGGCGAGAAACTACCCATCCCTGAAATTGTAGCACTCGGTGGTCAATCTGATGGCAA AAGCTCGCTTCTTGAAGCACTTCTTGGATTCAGATTCAATGTCCGTGAAGTCGAAATGGGTACTCGTAGACCCCTCATTCTTCAGATGGTTCATGACCCT TCCGCTCTTGAACCCCGTTGTCGATTTCAGGAAGAGGATTCTGAGGAATATGGAAGCTCTGTTGTGTCTTCAACGACAATTGCGGACATTATAAAATCCC GTACAGAGGTGCTTTTGAAAAGGACTAAAACTGCAGTTTCTTCTAAGCCAATTGTGATGAGAGCTGAATATGCACATTGTCCTAATCTCACCATCATTGA TACCCCTGGCTTTGTCCTTAAGGCAAGGAAAGGAGAACCAGAGAACACGCCTGATGAAATTCTTTCAATGGTGAAGTCATTGGCCAGTCCTCCCCATCGT ATTCTTTTGTTCCTTCAACAGAGTAGTGTGGAATGGTGTTCATCATTATGGTTGGATGCAATTAAGGACATTGATCCAAACTTCAGAAGGACAGTAATCG TTGTTTCAAAATTTGACAATAGGCTCAAGGAGTTTAGTGACCGTTGGGAAGTGGATCGTTATCTAAGTGCAAGTGGATACCTAGGGGAGAACACTCGTCC TTTCTTTGTGGCTCTGCCAAAGGATAAAAACACCATAACAAATGATGAGTTCCGCAGGCAAATATCTCAAGTGGATTCAGAAATTCTACATCATTTACGT GATGGGGTCAAGGGAGGATTTGATGAAGAGAAGTTTCGGCCCTATATTGGTTTCAGCACTCTGAGGGACTATTTGGAGTCTGAACTTCAAAAGAGATACA AAGAAGCTGCTCCAGCAACCCTAGCTCTTCTTGAGCAACGCTGTTGTGAAGTTAATGCTGAGCTGGATAGAATGGACTCGAAAATATTGGCTACTTCTGA TGTTGCTCATCTGCGGAGATCTGCAATGTTGCATGCAGCTTCTATTAGCAATCATGTGGGAGCTTTGATTGATGGAGCAGCCGATCCTGCCCCTGAGCAG TGGGGGAAAACAACAGTAGAGGAGCAGGCAGAGAGTGGTATTGGGATTTGGCCAGGTGTTACTGTAGATATAAAACCTCCCAATGCTACTCTTAGACTGT ATGGAGGAGCTGCTTTTGAAAGAGTAATGCATGAGTTCCGGTGTGCTGCATATTCCATTGAATGTCCTCCAGTATCTAGGGAGAAGGTGGCAAATATATT ACTCGCCCATGCTGGTCGTGGCGGGGGTAGAGGTGTGACAGAAGCTGCTGCTGAGATCGCCCGCGCTGCTTCCCGGTCTTGGCTTGCTCCTCTACTTGAC ACAGCCTGTGATCGGCTTGCCTTTGTTCTTGGGAATCTCTTTGACCTTGCTTTAGAAAGAAATCACATCCGTGACTCAGAATATGATAAGAAAAATGGAA ATATGGACGGGTATGTTGGTTTTCATGCTGCATTAAGGCATGCTTATAGTAGGTTCATAAAGGATCTTGCAAAACAGTGCAAGCAATTAGTTCGGCATCA CCTTGATTCAGTTACAAGCCCATATTCTCAGGTCTGTTATGAGAATGACTTTCAAGGAGGCTTTGGTTTGAGTACAACATCTTGTTTTAAGTTCAATCAA GTTTCTGCTGGTCCATTTTACCTTGAGTTATCAGATTGTGGGGCACCATCACGTGATGAAACTACGAGAGACCAGGAGAATATACCTCCGGAAAAAATTG TACAGCAAACTACTCCAGGAAAAGTTGCAGAAGCTAGAGAAGCTCTTAAAGAGAGCCAAATGACTGTGCCTGAGACCCCATCTCCAGACCAGCCATGTGA TGTGGTATACGCTGGTGTAAGGAAGGAGAATGTGAACTGCAATGAAATTGGACCAAGAAAGAGAATTTCAAGAATGATCGGACATACCAAGAACACTGAA AATTTAAGAGTTCAAAACGGTGGCAGTCTTTTATTTGGAAATGGTGATAGTGGTTCGAGATCAGGGTCAGCTTACTTGGAAATCTGCTCATCTGCTGCAC AGCATTTTGCGCGGATACGTGAGGTTCTTGTGGAACGAAGCGTGACATCAACTTTGAACTCTGGATTCCTAACTCCATGTCGGGATCGGCTTGTTGTGGC GCTTGGGTTGGATTTGTTTGCTGTAAATGACGAGAAATTCATGGACATGTTTGTTGCTCCTGGTGCTATTGATGTGCTACAGAATGAGCGCCATTCTCTT CAGAAACGCCAGAAGATACTCCAATCTTGCTTGAACGAGTTCAAAAGTCTTGCTAGGTCACTTTAA
AA sequence Show only first row Show all	>Potri.011G118500.1 pacid=42781529 polypeptide=Potri.011G118500.1.p locus=Potri.011G118500 ID=Potri.011G118500.1.v4.1 annot-version=v4.1 MATTNAHLTTPTKTPSTNSSSLSRKHQNNPSNSRFEAYNRLQAAAVAFGEKLPIPEIVALGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMVHDP SALEPRCRFQEEDSEEYGSSVVSSTTIADIIKSRTEVLLKRTKTAVSSKPIVMRAEYAHCPNLTIIDTPGFVLKARKGEPENTPDEILSMVKSLASPPHR ILLFLQQSSVEWCSSLWLDAIKDIDPNFRRTVIVVSKFDNRLKEFSDRWEVDRYLSASGYLGENTRPFFVALPKDKNTITNDEFRRQISQVDSEILHHLR DGVKGGFDEEKFRPYIGFSTLRDYLESELQKRYKEAAPATLALLEQRCCEVNAELDRMDSKILATSDVAHLRRSAMLHAASISNHVGALIDGAADPAPEQ WGKTTVEEQAESGIGIWPGVTVDIKPPNATLRLYGGAAFERVMHEFRCAAYSIECPPVSREKVANILLAHAGRGGGRGVTEAAAEIARAASRSWLAPLLD TACDRLAFVLGNLFDLALERNHIRDSEYDKKNGNMDGYVGFHAALRHAYSRFIKDLAKQCKQLVRHHLDSVTSPYSQVCYENDFQGGFGLSTTSCFKFNQ VSAGPFYLELSDCGAPSRDETTRDQENIPPEKIVQQTTPGKVAEAREALKESQMTVPETPSPDQPCDVVYAGVRKENVNCNEIGPRKRISRMIGHTKNTE NLRVQNGGSLLFGNGDSGSRSGSAYLEICSSAAQHFARIREVLVERSVTSTLNSGFLTPCRDRLVVALGLDLFAVNDEKFMDMFVAPGAIDVLQNERHSL QKRQKILQSCLNEFKSLARSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	0	1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	1.41	0.9510
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	1.73	0.9579
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	1.73	0.9460
AT4G28230			unknown protein		Potri.019G116200 [exp]	2.44	0.9361
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	3.46	0.9433
AT3G48210			unknown protein		Potri.015G080900 [exp]	3.60	0.9166
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	5.00	0.9398
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	5.29	0.9318
AT1G48405			Kinase interacting (KIP1-like)...		Potri.012G038000 [exp]	6.00	0.8984
AT1G54385			ARM repeat superfamily protein...		Potri.013G058700 [exp]	6.63	0.9275

Compare expression of checked genes

Potri.011G118500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.