Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 1011 / 0 Protein kinase superfamily protein (.1) AT1G57700 623 / 0 Protein kinase superfamily protein (.1) AT1G09600 621 / 0 Protein kinase superfamily protein (.1) AT5G50860 612 / 0 Protein kinase superfamily protein (.1) AT1G71530 612 / 0 Protein kinase superfamily protein (.1.2) AT1G54610 608 / 0 Protein kinase superfamily protein (.1.2.3) AT1G03740 587 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 582 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G74330 568 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 564 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399700 [exp] 1362 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G130000 [exp] 788 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 710 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 670 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 666 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 647 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 644 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 643 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 639 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025773 [exp] 1157 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 1004 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 722 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 701 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 668 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10018601 [exp] 652 / 0 AT1G53050 651 / 0.0 Protein kinase superfamily protein (.1) Lus10033975 [exp] 648 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 629 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 626 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039836 [exp] 624 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G119400.1 pacid=42781378 polypeptide=Potri.011G119400.1.p locus=Potri.011G119400 ID=Potri.011G119400.1.v4.1 annot-version=v4.1 ATGGGTTGCCTTTGCTGTAAACCCTCTGCAATTGAGGATAGCAAAGAGAGTCCAAGGGAGAGGCTCTCAAGTAAGGCGTCGTCTGACTTGAGGGTATCAA GGGCCACCTCTTCAAGGAGGGAGGAAGCATATAGAGCGAAAGATCGATGTGATGGTAATGATGGTAGGACAATGTTGATTGATAAGCAAGTGAATGGATC TCTTAGAGTGCATGGGGGCGAGCACGTTGAGAGGAAGAGGGACAAGTCAGAGTATGCTGTTGTTCACCACCCAGGGATGGGCAGCATACCGAAAGCTACT GAAGGGGAGCAGGTTGCAGCAGGGTGGCCTTCCTGGCTAGCTGCTGTAGCTGGAGAAGCAATCAAAGGTTGGTTGCCACGGCGTGCAGATTCATTTGAGA AGCTAGATAAGATTGGCCAGGGAACCTACAGTAATGTTTATAGGGCCCGTGACCTTGATCAAAAGAAGATTGTTGCTTTGAAGAAAGTAAGATTTGATAA CCTGGAACCTGAGAGCGTTCGCTTCATGGCCAGGGAAATTCACATTTTGCGTAGGCTTGACCATCCTAATGTAATAAAGTTAGAAGGTCTAGTTACATCA AGGATGTCTTGCAGCTTGTACCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGGCTAGCCGCACACCCTGGTCTGAAGTTTACAGAAGCCCAGGTGA AATGTTACATGCAACAACTTTTACGAGGACTTGATCACTGTCACAGCCGTGGTGTTCTGCACCGTGATATAAAGGGGTCCAACCTATTAATTGACAACAA TGGTATCTTAAAAATTGCAGACTTTGGACTAGCGAGTTTTTATGATCCTGCTCATGTTCAGCCACTGACAAGTCGTGTTGTGACTCTTTGGTATCGTCCT CCTGAGCTTCTACTTGGAGCTACCTACTATGGGACAGCTGTTGATTTGTGGAGTACAGGTTGCATACTTGCTGAATTGTATGCAGGCAAGCCTATTATGC CTGGGAGAACTGAGGTGGAGCAGCTGCATAAAATTTTCAAGCTGTGTGGCTCACCTTCTGAAGATTATTGGAGAAAATCAAAGTTGCCTCATGCAACTAT CTTTAAGCCTCAGCAGCCTTATAGACGCTGTGTTGCAGATACATTTAAGGAATTCCCTCCTCCGGCATTAGCTCTTATGGAGACCCTGCTCTCCATTGAT CCTGCAGATCGTGGGTCTGCAGCTTCTGCACTGAGGAGTGAGTTCTTTATAACCAAGCCGCTTCCATGTGATCCTTCAAGCTTTCCCAAGTATCCTCCTA GCAAAGAATTTGATGCAAAAATGCGAGATGAAGAAGCTAGGAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAAATCTGACATGGAAAGAAGAGGACGGCG GGAATCTCGTGCTGTCCCGGCACCTGATGCCAATGCTGAGCTAGTTTTATCAATGCAGAAAAGACATGGTCAGTCAAATTCCAAGAGCCGGAGTGAGAAG TTTAATCCCCATCCAGAAGAAGTTGCTTCTGGCTTTCCAATCGATCCACCTAGACCATCTCAAGCTGCAGAATCAAACATGGATCCTCAGGGGCATCAGC ATAAGAGAGCTTCCCATTCTGGGCCATTGTCTCACCGTGCTGCATGGGCTAAGGCCAGCAGGAACCCTGATGATGCTCCTAAGATTTCCACTGGGGCTGA CTTGTCAACAATTTCAAGCTTAGTGGCAGCACGGAGGAGTTTATTGTCTGAAGATCGCAACGAAAGGTCTGGCCTAGCACAACCAGAAGTTCCAAAACTA ATGGCAAGGTTTCCAGGATCCTTCAAAGAAACCTCAGAATCCTTCACCCAACAGGATCCAAGGCATCCGTCGCAGGGTGTTGCAGGTTTCCATCAAAAGG AAGATGGAAGAAATAGCAGTAAAGATCCAGTCCTTCTTGGCTATGGGTCAAAGGGTCACAAAATTCACTATTCTGGTCCATTGATAGTTCCATCAGGGAA CGTGGATCAGATGCTGAAGGATCATGATCGCCAGATCCAGGAAGCTGTTAGACGAGCACGTCTTGACAAGGAAAAGGTTAGAAAAGTCCAGGCTGAAAGC AACCAAATATCAACCAATTCATTATTTGTTTCAGGTCGATGA
AA sequence Show only first row Show all	>Potri.011G119400.1 pacid=42781378 polypeptide=Potri.011G119400.1.p locus=Potri.011G119400 ID=Potri.011G119400.1.v4.1 annot-version=v4.1 MGCLCCKPSAIEDSKESPRERLSSKASSDLRVSRATSSRREEAYRAKDRCDGNDGRTMLIDKQVNGSLRVHGGEHVERKRDKSEYAVVHHPGMGSIPKAT EGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTS RMSCSLYLVFEYMEHDLAGLAAHPGLKFTEAQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPAHVQPLTSRVVTLWYRP PELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVADTFKEFPPPALALMETLLSID PADRGSAASALRSEFFITKPLPCDPSSFPKYPPSKEFDAKMRDEEARRQGAAGSKGQKSDMERRGRRESRAVPAPDANAELVLSMQKRHGQSNSKSRSEK FNPHPEEVASGFPIDPPRPSQAAESNMDPQGHQHKRASHSGPLSHRAAWAKASRNPDDAPKISTGADLSTISSLVAARRSLLSEDRNERSGLAQPEVPKL MARFPGSFKETSESFTQQDPRHPSQGVAGFHQKEDGRNSSKDPVLLGYGSKGHKIHYSGPLIVPSGNVDQMLKDHDRQIQEAVRRARLDKEKVRKVQAES NQISTNSLFVSGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	0	1
AT4G35240			Protein of unknown function (D...		Potri.002G011700 [exp]	2.82	0.7642
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	3.16	0.7775
AT1G53050			Protein kinase superfamily pro...		Potri.001G399700 [exp]	5.74	0.6957
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	11.61	0.7720	ATHB.11
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	12.12	0.7358
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	15.09	0.7957	ATHB.12
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	15.49	0.7328
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	21.02	0.6943
AT4G28100			unknown protein		Potri.013G148700 [exp]	23.23	0.7033
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	24.37	0.7340

Compare expression of checked genes

Potri.011G119400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.