Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SPA3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15354 982 / 0 SPA3 SPA1-related 3 (.1) AT1G53090 951 / 0 SPA4 SPA1-related 4 (.1.2) AT2G46340 528 / 2e-172 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 428 / 3e-134 SPA2 SPA1-related 2 (.1) AT2G32950 352 / 2e-109 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 190 / 4e-53 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 171 / 1e-46 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 76 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT2G47990 70 / 5e-12 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT1G73720 69 / 1e-11 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399600 [exp] 1559 / 0 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.001G094500 [exp] 568 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G095300 [exp] 552 / 0 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.003G137100 [exp] 515 / 1e-166 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.014G159300 [exp] 378 / 3e-119 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 352 / 6e-112 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 356 / 1e-111 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 182 / 2e-50 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 176 / 3e-48 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019475 [exp] 1059 / 0 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10043323 [exp] 969 / 0 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019476 [exp] 660 / 0 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10032358 [exp] 395 / 2e-122 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10029990 [exp] 358 / 8e-112 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 358 / 1e-111 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033942 [exp] 331 / 5e-99 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10027454 [exp] 153 / 1e-41 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 129 / 1e-32 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029221 [exp] 74 / 2e-13 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.011G119500.11 pacid=42782214 polypeptide=Potri.011G119500.11.p locus=Potri.011G119500 ID=Potri.011G119500.11.v4.1 annot-version=v4.1 ATGTGTTTGTTCTGGCTTGCATGCAGCCCTAGGGGGATAGCGATGGAGGGCTCATCTGAGTCTGCTTGGCAGAAGTCTGATAGTCATAGGGAATTTAATA CTTCAGTGGTTTCCAACAGGAATCTGAGATCTACATCTCACAATTCTGGGTTTAGAAAGGAGAGGACTGATAGGGTTGTTCTGGCGCGTCAAAACCTTAA AAACCAGGCCGGTACTTTATCTGGGGTTTGTGAGGATGAAGCTGCAGTTGACCGTTTTATGCAAACCATAGAATGGAACGATGTTAGCTTGAGGCACTGG TTGGACAAACCACAACGGTCTGTTAATGAATTTGAATGTTCGCACATATTTAGGCAAGTAGTCGAAGTTGTAAATGTGGCACATTCACAAGGAATTGTTG TTCACAATGTCCGGCCTTCTTGCTTTGTTATGTCGTCATTTAACCATGTCTCCTTCATTGAGTCCGCGTCTTGCTCAGATTCCGGGTCTGATTCTTTGGA TGATGGATTGAACAGCGAAACTATGGAGGTTAAAAATTCTTCTTCTTCTTTGCCCCATGACATGTGCCAGCAAAGAAGTAGGTTACAAAGTGAAGATTTT CTACCTGCATCTACTCCAACAAATACTTTATCGGAAGCCAGTTGCATGCAGTCGAGCTTGGTTTATGCAGCAGATGTACCATTAGTGGAAGAAACAGAAG AACATAAAGTCCATGATATGAGGAATGTCGAACATGAAGAAGAAAGGGAACAACCATTTCCAATGAAGCAAATATTGCTTATGGAGTCCTGTTGGTATAC CAGTCCTGAAGAGGATGCTGGTTCACCAAGCTCTTGCGCTTCAGACATCTACCGATTGGGAGTTCTTCTTTTCGAGTTGTTCTGCCCATTCACTTCAAGT GAAGACAAAAGCAGAACTATGTCTAGTCTCAGACATCGAGTTCTTCCTCCTCAACTGCTGCTCAAGTGGTCAAAAGAAGCTTCATTTTGCTTATGGTTAC TGCACCCTGAGCCAAGTAGTCGGCCAAAAATAGGTGAATTGCTGCAAAGCGACTTTCTTAATGAACCAATAAACAATTTGGAAGAGCTTGAAGCAGCAAC ACAGCTTAGAGAGAGAATAGAGGAGCAGGAATTGTTGCTGGAATTCCTTTTACTAATACAACAAAGAAAACAGGATGCAGCTGATAAGTTGCAAGATACT ATTTCTCTTCTATGTTCTGATATTGAAGAAGTTACAAAGCATCAAGTGTTTCTTAAGAAAAAGGGAGACACATGTAAAGAAAGAGGAGAGGGTGATCATT TAACATCAAATATCCCTGCACTGAATGTTGTTGACATTGATGATTCTTCTAGCTTGGGTTCCAGAAAACGATTTTGCCCAGGCCTTGAGATTCACAACGT AGAGAAATGTGATGATAATCTAGATGAAAGTCAGAACTCAGATACATTTGTAGAATCACAGGAAAGTCCTCTTTTTAGAAGTTCACGATTAATGAAGAAC TTTAAGAAATTAGAGTCCGCATATTTTTTGACAAGATGCAGACCAGTAAGGCCACCAGGGAAACCATCATTTGCTAGAAATTTACCAGTAATTAGTGATG GGAGAATCTCTATTGTTGCTACTGAAAGAAGCTCCATAAATAGCATAGCACCAAAGCAGCAGTTTACTGAGGGTAGACGAAGTGGATGGATAAGTCCATT CCTTGAGGGTTTGTGCAAGTATCTATCTTTTAGCAAGTTAAAAGTGAAGGCTGACCTGAAGCAAGGGGATTTGTTGAACTCTTCAAACCTAGTCTGCTCT ATTAGTTTTGATCGTGATGGAGAATTTTTTGCTACAGCTGGTGTAAATAAAAAGATAAAAGTATTTGAATGTGATACAATTATAAATGAAGCTCGTGATA TCCACTATCCTGTTGTTGAAATGGTATGCAGGTCAAAGCTAAGCAGCATATGTTGGAACAGCTACATTAAAAGCCAACTTGCTTCGAGTAACTTTGAAGG TGTGGTGCAGGTATGGGATGTTACAAGAAGTCAAGTAGTGACAGAAATGAGAGAGCATGAGAGGCGTGTGTGGTCTGTTGACTTTTCATCAGCAGATCCC ACAATGCTGGCTAGTGGGAGTGATGATGGTTCCGTCAAGCTATGGAGTATCAATCAGGGAGTAAGTATCGGTTCCATCAAAACAAAAGCCAACATCTGCT GTGTTCAGTTTCCCTTGGATTCTAGTTGTTCTATTGCTTTTGGTTCAGCAGATCACAGAATTTATTACTATGATCTCCGCAACTCCAAAGTTCCTCTCTG TACATTGATTGGACACAATAAAACTGTGAGTTATGTGAAGTTTGTAGATATGACCAATCTTGTTTCGGCATCAACGGACAACACACTGAAGCTCTGGGAT TTGTCAATGGGCACATCTAGGGTTATTGATAGCCCCGTTCAATCCTTCACAGGCCACATGAATGCAAAGAACTTCGTGGGTTTGTCTGTAGCAGATGGTT ACATTGCAACTGGCTCGGAAACAAATGAGGTTTTTGTCTATCACAAAGCTTTCCCCATGCCGGTGTTGTCCTTCAAGTTTAACAACACAGACCCGCTTTC TGGCCATGAAATGGATGATACTGCACAATTTATTTCTTCTGTCTGTTGGCGTGGCCAGTCATCTACGTTGGTTGCTGCAAATTCTACTGGGAATATCAAA ATTTTGGAGATGGTTTAA
AA sequence Show only first row Show all	>Potri.011G119500.11 pacid=42782214 polypeptide=Potri.011G119500.11.p locus=Potri.011G119500 ID=Potri.011G119500.11.v4.1 annot-version=v4.1 MCLFWLACSPRGIAMEGSSESAWQKSDSHREFNTSVVSNRNLRSTSHNSGFRKERTDRVVLARQNLKNQAGTLSGVCEDEAAVDRFMQTIEWNDVSLRHW LDKPQRSVNEFECSHIFRQVVEVVNVAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSLDDGLNSETMEVKNSSSSLPHDMCQQRSRLQSEDF LPASTPTNTLSEASCMQSSLVYAADVPLVEETEEHKVHDMRNVEHEEEREQPFPMKQILLMESCWYTSPEEDAGSPSSCASDIYRLGVLLFELFCPFTSS EDKSRTMSSLRHRVLPPQLLLKWSKEASFCLWLLHPEPSSRPKIGELLQSDFLNEPINNLEELEAATQLRERIEEQELLLEFLLLIQQRKQDAADKLQDT ISLLCSDIEEVTKHQVFLKKKGDTCKERGEGDHLTSNIPALNVVDIDDSSSLGSRKRFCPGLEIHNVEKCDDNLDESQNSDTFVESQESPLFRSSRLMKN FKKLESAYFLTRCRPVRPPGKPSFARNLPVISDGRISIVATERSSINSIAPKQQFTEGRRSGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCS ISFDRDGEFFATAGVNKKIKVFECDTIINEARDIHYPVVEMVCRSKLSSICWNSYIKSQLASSNFEGVVQVWDVTRSQVVTEMREHERRVWSVDFSSADP TMLASGSDDGSVKLWSINQGVSIGSIKTKANICCVQFPLDSSCSIAFGSADHRIYYYDLRNSKVPLCTLIGHNKTVSYVKFVDMTNLVSASTDNTLKLWD LSMGTSRVIDSPVQSFTGHMNAKNFVGLSVADGYIATGSETNEVFVYHKAFPMPVLSFKFNNTDPLSGHEMDDTAQFISSVCWRGQSSTLVAANSTGNIK ILEMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.011G119500 [exp]	0	1	SPA3.2
AT5G13730		SIGD, SIG4	sigma factor 4 (.1)		Potri.009G057200 [exp]	2.44	0.9489
AT2G46340		SPA1	SUPPRESSOR OF PHYA-105 1, SPA ...		Potri.014G095300 [exp]	2.82	0.9388	SPA1.1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032500 [exp]	4.47	0.9337
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	6.00	0.9394
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	6.08	0.9531
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Potri.003G034700 [exp]	11.83	0.9389
AT5G54090			DNA mismatch repair protein Mu...		Potri.012G005000 [exp]	12.40	0.9287
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	14.07	0.9375
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	14.38	0.9418
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	15.00	0.9277

Compare expression of checked genes

Potri.011G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.