Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15350 614 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 595 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 540 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 456 / 3e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 455 / 7e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 429 / 1e-148 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 422 / 6e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 382 / 3e-131 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 359 / 8e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 340 / 1e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G399500 [exp] 747 / 0 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.017G075600 [exp] 480 / 6e-169 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 466 / 3e-163 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 457 / 8e-160 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 442 / 7e-154 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G003300 [exp] 434 / 2e-150 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 414 / 2e-143 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 387 / 4e-132 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 357 / 4e-121 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043324 [exp] 686 / 0 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 685 / 0 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10014495 [exp] 478 / 5e-168 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 476 / 3e-167 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 432 / 1e-149 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 431 / 2e-149 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 427 / 7e-148 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 417 / 6e-144 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 397 / 2e-136 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 388 / 6e-133 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.011G119600.2 pacid=42780527 polypeptide=Potri.011G119600.2.p locus=Potri.011G119600 ID=Potri.011G119600.2.v4.1 annot-version=v4.1 ATGGGGTCCCTAAACGTGGAGAAGAAATGGGGTTTCCCTCTTGTCATAAGCTCTCTCATATGTCTATTCCTTTTAGCAACTTGTTTCAACATGGGTCTTG TTTCTTCACTGCATACAATCAATCAAATCTTCAACATTTTCCCATTTCGAACCAACCAGACAACTCAAGGTTACGCTGAAAAAAAAGTCTCCCTATCTCC TTCCCCTCCTCTCCCTTCCAAGATCCCTCGATTTGCTTATCTAGTTTCTGGGTCTAAAGGTGATTTGGAAAAGCTCTGGAGAACTCTTCATTCGCTTTAC CATCCCCGGAACGAATATGTTGTTCATCTGGACCTTGAGTCCTCTGCAGAGGAAAGATTGGAGCTTGCATCGCGAGTGGAAAAGCATCCGATTTTCTCAA AGGTTGGAAATGTTTATATGATCAGCAAAGCCAATATGGTTACCTATAGAGGACCCTCCATGGTTTCTAATACACTTCATGCTTGTGCAATTCTTCTCAA AAGGAGCAAAGATTGGGATTGGTTTATCAATCTCAGTGCTTCTGATTATCCTCTTGTTACTCAAGACGATCTTATTCACACATTTTCAACTGTAAACCGA AATCTAAACTTTATTGAGCACACAAGTCAGCTGGGCTGGAAAGCGGAGAAACGAGCAATGCCTTTGATTGTGGACCCTGGTCTTTACTCGACAGCTAAAG CAGATATTTACGGGGCCACGCCACAGAGATCTTTGCCAACAGCATTTAAATTATTCACCGGTTCAGCATGGATGGTTCTCACACGGTCATTTGTTGAATA CTTAATTTGGGGTTGGGATAATCTACCACGAACCTTGTTGATGTACTACACAAACTTTGTTTCCTCACCTGAAGGATACTTTCACACAGTAATATGCAAT GTACCAGAGTTTGCTCAAACTGCAGTCAGCCATGACTTGCACTACATTGCTTGGGACAATCCTCCCAAGCAGCATCCTCACACCCTCACCATCAATGACA CAAACGAGATGATTGCGAGTGGTGCTGCCTTTGCCAGAAAATTCAAAGGAGACGATCCTGTCTTGGATAAGATTGACAAGGATTTACTTCACCGGAAGAA TGGGAGCTTCACTCCGGGTGGATGGTGCTCTGGTAGTCCCAAATGTTCTGAGGTCGGGAACCTGGACAATATTAAACCAGGCCCTGGAGCTAGCAGACTG AAACGCCTCATATCTAGGGTAGCTTTGTTTACAACGCTTAAACAAAACCAATGTAAATAG
AA sequence Show only first row Show all	>Potri.011G119600.2 pacid=42780527 polypeptide=Potri.011G119600.2.p locus=Potri.011G119600 ID=Potri.011G119600.2.v4.1 annot-version=v4.1 MGSLNVEKKWGFPLVISSLICLFLLATCFNMGLVSSLHTINQIFNIFPFRTNQTTQGYAEKKVSLSPSPPLPSKIPRFAYLVSGSKGDLEKLWRTLHSLY HPRNEYVVHLDLESSAEERLELASRVEKHPIFSKVGNVYMISKANMVTYRGPSMVSNTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTVNR NLNFIEHTSQLGWKAEKRAMPLIVDPGLYSTAKADIYGATPQRSLPTAFKLFTGSAWMVLTRSFVEYLIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICN VPEFAQTAVSHDLHYIAWDNPPKQHPHTLTINDTNEMIASGAAFARKFKGDDPVLDKIDKDLLHRKNGSFTPGGWCSGSPKCSEVGNLDNIKPGPGASRL KRLISRVALFTTLKQNQCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15350			Core-2/I-branching beta-1,6-N-...		Potri.011G119600 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	10.67	0.8510
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	14.38	0.8471
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.017G051700 [exp]	22.20	0.7868
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	25.78	0.7402
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036400 [exp]	26.22	0.8221
AT5G18130			unknown protein		Potri.013G057200 [exp]	27.05	0.8241
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	32.32	0.8349
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Potri.004G034100 [exp]	39.47	0.7990
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	40.49	0.7978
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	42.00	0.8237	Pt-LACS6.1

Compare expression of checked genes

Potri.011G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.