Plant FIBer expression Database

Potri.011G119700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27500 431 / 6e-144 PPI1 proton pump interactor 1 (.1)
AT3G15340 189 / 3e-52 PPI2 proton pump interactor 2 (.1.2)
AT5G36690 166 / 4e-44 unknown protein
AT5G36780 166 / 4e-44 unknown protein
AT1G20970 132 / 8e-32 unknown protein
AT1G53110 101 / 1e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G399400
[exp]
734 / 0 AT4G27500 463 / 2e-156 proton pump interactor 1 (.1)
Potri.006G191500
[exp]
115 / 1e-26 AT1G20970 309 / 6e-86 unknown protein
Potri.013G130500
[exp]
77 / 4e-15 AT1G10880 67 / 2e-12 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005546
[exp]
483 / 7e-164 AT4G27500 415 / 2e-137 proton pump interactor 1 (.1)
Lus10041932
[exp]
478 / 5e-162 AT4G27500 410 / 4e-136 proton pump interactor 1 (.1)
PFAM info
Representative CDS sequence
>Potri.011G119700.3 pacid=42781285 polypeptide=Potri.011G119700.3.p locus=Potri.011G119700 ID=Potri.011G119700.3.v4.1 annot-version=v4.1
ATGGGCGTTGAGGTTGTGGCACCTGAGGAGGTTCAGGCCCCCGTTGACGGTGTAAGTGAAGTAGATAAATCTGTTCTGCACCAGAAGGAAAATGGGAAAC
TGGATAAGGTATCAGGGCTCACGGAGCCCATACAATTCGGTTCACATGGGGAAGAGCCGGTTAAGGCAGAAGGAAATGATGTTACAGATGCCAACTTGCC
AAAGGATGCAGTTGATGAGTGGCCTGCTCCCAAGCAGGTCCATTCCTTTTATTTTGTAACATACCGACTATATGATGATCCAAAAATTAAGGCCAAAATT
GATCAGGCTGATAAGGAGATTCAGAAAAGAAATCAATCCCGGTTTCAGATTACAGAAGAATTAAAAGATAGAAGGTCAAAACGAGCGGAGTTGATCAACC
AGGTGAGAGCTCTGAAGAATGAGGGTAGGCAGTATAAATCGATCTTCGATGAGAAAAGAAAGGAAATGGAGCCTTTGCAGCAGGCACTGGGCAAGCTGCG
TAACACAAATAATGCTGGTCGTGTTGGCATTTGTTCATCTGAGGAAGAGCTTAATGATCTTATCTACAGCTTGCAATACCGCATGCAACACGAGAGCATC
CCATTGACAGAGGAAAAGCAAATACTTAGAGAAATCAAACAGCTTGAGGGGACAAGGGAAAAAGTAATTGCTAATGCTGCTATGAGAACAAAGATTCAGG
ATTCATTGGGTCAGAAAGAAGCCATTCAAGATCAGGTCAAACTTATGGGTGTTGACTTGGATGGAGTAAGGAAGGAGAGACAAGCACTTTGGGAAAAACT
TGATGGACTTGAAGCGAAAGTGCAGGCATTGGATGCTGAAATTAAAACTTTACAGGATGAGCTGGAAGCCGTGATCCAGAAGAGGGAAAAAACATATGAA
ACTCTTCAGGAACTTAGGAAACAGCGTGATGAGGCGAATGCCAACTTTTACCAAAGCCGTATGCTCTTGACGAAAGCCAAAGAACTTGCTGCTAAGAAAG
ATGTTAAGGCTCTTGAAGAACTTGCACTTGATGAGGTTGAAAAATTTATGTCCCTCTGGTGCCATAACAAGTCCTTTAGGGATGATTATGAGAAGAGAAT
TTTGCCATCCCTTGACCGGCGGCAATTGAGTAGGGATGGGCGAATTAGGAACCCTAATGAGAAGCCGTTAGTGATATTGGAGACACCAAAGCCTTCTGAA
CCAGAGCCGGTGGTAAAAGCTATTCCAAAGAGAGCAAAAGAAGATCCAAAACCCATTCCACCGAAAGATACTTTACCAACCCAAAGGGTGCAGAAAGAAA
TCACTAAGACAGAATTGAAGCCCACTTCAGAGCACTCTGACATAGTTGACAAGGAGATCTCTGGGTTGGAAAATCTGTCAAAGAATCCTTCTCCTGCAGA
AAAGGAAGTTGATGAAGCAAAATTGAAGGAGATAAAAAGAGAAGAGGAAATAGCAAAAGCTAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGCTGAGAAA
GCTGCTGCAAAAGCAGCTGCAAGAGCTCAAAAGGATGCTGAGAAAAAGCTCAAGGAGCGTGAAAAGAAATTGAAGAAGAAGGCTGCGGCATCTGAACCAA
CTACTGAGCCTGAGCAACTTGCTGAAGCAGTTGCGGAGGCAGCAGAACCAACAGTCAATGATGAGGTTCCTGTTTCAGTGAAGGAAAAAGTTCGGAAAGA
GAAAACTGTTAGGTCTAGGAATCGTCCAAGAGGCCCAGATTCACTTCCCAAAGTCATCACGAGGAGGAAAAAGTCAACTAACTTTTGGATGTGGGCTGCT
CCTGCTGCTGCTTTTGTAGTTCTTTTGTTTCTAGCACTCGGGTACTATTATCTTCTCTGA
AA sequence
>Potri.011G119700.3 pacid=42781285 polypeptide=Potri.011G119700.3.p locus=Potri.011G119700 ID=Potri.011G119700.3.v4.1 annot-version=v4.1
MGVEVVAPEEVQAPVDGVSEVDKSVLHQKENGKLDKVSGLTEPIQFGSHGEEPVKAEGNDVTDANLPKDAVDEWPAPKQVHSFYFVTYRLYDDPKIKAKI
DQADKEIQKRNQSRFQITEELKDRRSKRAELINQVRALKNEGRQYKSIFDEKRKEMEPLQQALGKLRNTNNAGRVGICSSEEELNDLIYSLQYRMQHESI
PLTEEKQILREIKQLEGTREKVIANAAMRTKIQDSLGQKEAIQDQVKLMGVDLDGVRKERQALWEKLDGLEAKVQALDAEIKTLQDELEAVIQKREKTYE
TLQELRKQRDEANANFYQSRMLLTKAKELAAKKDVKALEELALDEVEKFMSLWCHNKSFRDDYEKRILPSLDRRQLSRDGRIRNPNEKPLVILETPKPSE
PEPVVKAIPKRAKEDPKPIPPKDTLPTQRVQKEITKTELKPTSEHSDIVDKEISGLENLSKNPSPAEKEVDEAKLKEIKREEEIAKAKQAMERKKKLAEK
AAAKAAARAQKDAEKKLKEREKKLKKKAAASEPTTEPEQLAEAVAEAAEPTVNDEVPVSVKEKVRKEKTVRSRNRPRGPDSLPKVITRRKKSTNFWMWAA
PAAAFVVLLFLALGYYYLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.011G119700
[exp]
0 1
AT4G08180 ORP1C OSBP(oxysterol binding protein... Potri.019G015111
[exp]
4.00 0.6176
AT5G66210 CPK28 calcium-dependent protein kina... Potri.007G057600
[exp]
6.24 0.6183 CPK16,Pt-CPK16.1
AT1G11480 eukaryotic translation initiat... Potri.007G119200
[exp]
6.55 0.6472
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.001G399400
[exp]
6.92 0.6267 Pt-PPI1.4
AT5G06830 unknown protein Potri.006G059500
[exp]
18.00 0.5809
AT5G05660 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabi... Potri.010G188700
[exp]
19.28 0.6094
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Potri.011G127000
[exp]
23.36 0.5505
AT5G16600 MYB ATMYB43 myb domain protein 43 (.1) Potri.004G086300
[exp]
33.01 0.5772
AT2G28390 SAND family protein (.1) Potri.009G014400
[exp]
35.44 0.5951
AT5G32440 Ubiquitin system component Cue... Potri.006G066000
[exp]
48.74 0.4867

Potri.011G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.