Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53120 424 / 3e-150 RNA-binding S4 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005545 [exp] 402 / 3e-141 AT1G53120 396 / 6e-139 RNA-binding S4 domain-containing protein (.1) Lus10041931 [exp] 379 / 2e-132 AT1G53120 378 / 8e-132 RNA-binding S4 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [poplar] [flax] S4 PF01479 [poplar] [flax] S4 S4 domain
Representative CDS sequence Show only first row Show all	>Potri.011G119800.2 pacid=42782113 polypeptide=Potri.011G119800.2.p locus=Potri.011G119800 ID=Potri.011G119800.2.v4.1 annot-version=v4.1 ATGGCTACCACTGGGACTATAGCAACACCATGGTTTCTTAGAAGAGCATTTCAAACCTTATCACTCTCTCACTCTATTCCCAATAAAACACGCATCTCCT TTTGTGGAACCCAATTCTCTTTTCCCCTCTCCAGTCCCATTACCAGACACTCAGCTTTAGGGATGTGTCATGTGGCTCAAGCTACGAAGGGTGAAGTTGT TGCACTTAAGGGTGTAGAAGACAAAAGTGTCATTGAAGAAGTGAAGCGTATTCTAGACATGGCAAGAAGGGCATCATTACGAAGAGAAGTTCTCCATACA GATTTTCTCACCCCACCAACATTGAAGGAATCATTGCATGTGCTAGAAAAATTAGCTGACGTTAAGGCTATTGCTCAGGGAGGATACCCACAGGCTGAGC GTTGCCGGCTTTCTGTTGGACATCCAGAAACACTGACAAGTGATCCAGATATAGTTGCAGCATTGAGTATAACAGGAAACTTTGGATTTCAACTCTGTTC TCACGGTGACTTCCTTGGTGCAATTCTTGGTACAGGGATTGCCAGGAACAAGCTTGGGGATATAATCGTGCTGGGGGGGAAAAGGGCTCAAGTCCTACTT GTTCCAGATCTTGTAGACTATATTGTGTCATCACTGGACAAGGTTGGTGATGTTTCAGTTTCGTGTACACCGATCCCATTGCATGCTATTGAATATGAGC CTCCAAGGACTAAGTCATTTAAAACAGTGGAAGCATCGTTAAGAGTCGATGCCCTAGCCAGTGCAGGATTCAAGATTTCAAGGTCAAAACTAGTTGATTT GATTAGTAACAAGGATGTGCGTGTGAATTGGACCACAATCACAAAAAACAACACTACACTAAAAACTGGAGATGTCGTCTCAGTAAGTGGGAAAGGAAGG CTAAAGATAGGAGAAATAAATACTACAAGGAAAGGAAAGTTCGCAGTTGAGCTCATTCACTATCTGTAA
AA sequence Show only first row Show all	>Potri.011G119800.2 pacid=42782113 polypeptide=Potri.011G119800.2.p locus=Potri.011G119800 ID=Potri.011G119800.2.v4.1 annot-version=v4.1 MATTGTIATPWFLRRAFQTLSLSHSIPNKTRISFCGTQFSFPLSSPITRHSALGMCHVAQATKGEVVALKGVEDKSVIEEVKRILDMARRASLRREVLHT DFLTPPTLKESLHVLEKLADVKAIAQGGYPQAERCRLSVGHPETLTSDPDIVAALSITGNFGFQLCSHGDFLGAILGTGIARNKLGDIIVLGGKRAQVLL VPDLVDYIVSSLDKVGDVSVSCTPIPLHAIEYEPPRTKSFKTVEASLRVDALASAGFKISRSKLVDLISNKDVRVNWTTITKNNTTLKTGDVVSVSGKGR LKIGEINTTRKGKFAVELIHYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53120			RNA-binding S4 domain-containi...		Potri.011G119800 [exp]	0	1
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	2.00	0.7158
AT3G22750			Protein kinase superfamily pro...		Potri.008G156000 [exp]	5.29	0.7377
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Potri.014G163100 [exp]	39.57	0.6080
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G192800 [exp]	39.64	0.5721
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Potri.017G086500 [exp]	41.23	0.5844	CGS1.1
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	43.95	0.6009
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Potri.001G407000 [exp]	45.95	0.6279
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	57.87	0.6015
AT3G05545			RING/U-box superfamily protein...		Potri.013G015600 [exp]	61.31	0.5531
AT1G80940			unknown protein		Potri.003G184925 [exp]	62.92	0.6240

Compare expression of checked genes

Potri.011G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.