Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NTR1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02040 810 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 718 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G54140 657 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02020 652 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G01180 644 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT5G46050 453 / 1e-153 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT2G40460 437 / 2e-147 Major facilitator superfamily protein (.1) AT5G46040 435 / 1e-146 Major facilitator superfamily protein (.1) AT1G32450 435 / 5e-146 NRT1.5 nitrate transporter 1.5 (.1) AT3G53960 429 / 5e-144 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100200 [exp] 956 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 654 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 643 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 641 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 640 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 625 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 505 / 1e-173 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258900 [exp] 501 / 7e-172 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G029200 [exp] 491 / 3e-168 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030947 [exp] 890 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 885 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 864 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 862 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 838 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 647 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 634 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 616 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 542 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10003614 [exp] 484 / 1e-165 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.011G120000.4 pacid=42780970 polypeptide=Potri.011G120000.4.p locus=Potri.011G120000 ID=Potri.011G120000.4.v4.1 annot-version=v4.1 ATGAGTTCAGGGGAGGAACAGACTTTGCTCTTGGAAGATGAACTCCTACTACAGAACAAAAATAATGGACTCCACACAGGAGATGGCTCGGTCGACATTA ATGGGACGGCTGTTCTTAAGCAGAAAACTGGAAATTGGAGAGCATGCTCTTTCATATTGGGAAATGAATGCTGTGAACGCTTGGCCTACTATGGAATTGC TACTAATCTGGTCTCCTACCTTACTGGGAAGCTACATGAAGGAAATGTGTCAGCTGCAAAAAATGTTAACATTTGGGCAGGAACTTGCTACTTCACACCA CTCATTGGAGCCACTTTGGCAGATGCTTATTGGGGAAGATATTGGACCATTTCTGTTTTCTCCACAATTTACTTCATTGGAATGTGTACGTTGACTCTCT CAGCAACTATTCCTGTATTAAAGCCAGCTGAATGTATAGGTTCTCTATGCCCTCCAGCAACTCCTGCTCAGTATGGGGTATTCTTTTTTGGCCTCTATCT GATTGCATTTGGGACAGGTGGCATCAAACCATGTGTTTCATCCTTTGGGGCGGATCAGTTTGATGACACTGATCCTAAGGAAAGGGTAAAGAAGGGGTCC TTCTTCAATTGGTTCTATTTTTCAATCAACATTGGTTGTCTTGTATCAAGTAGTTTAATGGTATACATTCAAGACAAAGCTGGGTGGGGGCTAGGATTTG GAATTCCTGCATTGTTCATGGGCATAGCTATTGCTATCTTCTTTTCAGGCACGCCCCTTTATAGATTTCAGAGGCCAGTGGGGAGCCCAATTACTAGAAT GTGCCAAGTTGTGGTTGCGTCATTCCATAAGAGGAATTTGGAGGTTCCCCAAGACATTAGTCTCCTATATGAAACCCAAGAAAAACACTCAACCATTGAG GGAACCTGGAAACTAGCGCACAGCAATGAATTGAAATGCCTTGATAAAGCTGCTATAATTTCAGAGGCTGAGATAAAAGGTGGGGACTTCAGTGATCCAT GGAGGCTTTGTACTATGACTCAGGTGGAGGAATTGAAGATTTTGATCCGCATGTTTCCGATCTGGGCTACAGGCATTGTCTTTTCTGCTGCCCATGCCCA AATGAGTACAATCTTTGTGGAACAAGGGATGCTGATGGACAAGACAATTGGTTCTTTCAACATCCCTCCTGCTTCTATGATCACAATTGATGTTATTAGT GTTATTTTCTGGGTTCCAATCTATGATAGGATCATTGTTCCAATTGCAAGGAAGTTCACTGGCAGAGAGAGGGGCTTTTCAGAGTTGCAGCGTATGGGAA TTGGCTTGTTCATTTCTATGCTATCAATGACAGCTGCTGCTTTGCTAGAGATTAAGCGCTTGCAGCTTGTAAAAGAGCTTGGATTGGTTGGTGATGCTGT TGCAGTTCCTCTCAGTATCTTGTGGCAAATTCCCCAGTATATGTTGATGGGTACAGCAGAGATCTTTACATCCATTGGTCAGCTTGAATTTTTCTATGAA CAGTCTCCAGATGCCATGCGGAGTCTATGCAGTGCTTTGGCACTCCTGGCTGCATCTTTGGGTAATTACCTGAGCTCTTTTATTCTGAGCATGGTAACTT ACCTCACAACCACGGGTGGGAAGACAGGATGGATACCAGATAACTTAAATAAGGGGCACCTTGATTATTTATTCTGGCTTTTGGCTGGGCTCAGCTTCTT CAACTTGCTGATCTACACTATTTGTGCAAAGAGATATAAAGAGAAGAAGGCCTCCTAA
AA sequence Show only first row Show all	>Potri.011G120000.4 pacid=42780970 polypeptide=Potri.011G120000.4.p locus=Potri.011G120000 ID=Potri.011G120000.4.v4.1 annot-version=v4.1 MSSGEEQTLLLEDELLLQNKNNGLHTGDGSVDINGTAVLKQKTGNWRACSFILGNECCERLAYYGIATNLVSYLTGKLHEGNVSAAKNVNIWAGTCYFTP LIGATLADAYWGRYWTISVFSTIYFIGMCTLTLSATIPVLKPAECIGSLCPPATPAQYGVFFFGLYLIAFGTGGIKPCVSSFGADQFDDTDPKERVKKGS FFNWFYFSINIGCLVSSSLMVYIQDKAGWGLGFGIPALFMGIAIAIFFSGTPLYRFQRPVGSPITRMCQVVVASFHKRNLEVPQDISLLYETQEKHSTIE GTWKLAHSNELKCLDKAAIISEAEIKGGDFSDPWRLCTMTQVEELKILIRMFPIWATGIVFSAAHAQMSTIFVEQGMLMDKTIGSFNIPPASMITIDVIS VIFWVPIYDRIIVPIARKFTGRERGFSELQRMGIGLFISMLSMTAAALLEIKRLQLVKELGLVGDAVAVPLSILWQIPQYMLMGTAEIFTSIGQLEFFYE QSPDAMRSLCSALALLAASLGNYLSSFILSMVTYLTTTGGKTGWIPDNLNKGHLDYLFWLLAGLSFFNLLIYTICAKRYKEKKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	0	1	NTR1.4
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	2.23	0.8149
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	4.24	0.7731
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	6.32	0.7774
AT2G19080			metaxin-related (.1)		Potri.018G145508 [exp]	9.48	0.7490
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	14.00	0.7444
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	19.28	0.7201
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	20.97	0.7258
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.013G088600 [exp]	21.21	0.7390	XPO1.2
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	25.39	0.6785
AT3G28430			unknown protein		Potri.006G073600 [exp]	28.98	0.6996

Compare expression of checked genes

Potri.011G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.