Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53000 485 / 3e-175 AtCKS, KDSB CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G400900 [exp] 502 / 0 AT1G53000 481 / 1e-173 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014797 [exp] 493 / 3e-178 AT1G53000 496 / 3e-179 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10040889 [exp] 155 / 8e-47 AT1G53000 147 / 6e-44 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF12804 [poplar] [flax] NTP_transf_3 MobA-like NTP transferase domain
Representative CDS sequence Show only first row Show all	>Potri.011G120100.1 pacid=42781861 polypeptide=Potri.011G120100.1.p locus=Potri.011G120100 ID=Potri.011G120100.1.v4.1 annot-version=v4.1 ATGTCAATGTGCTCCTCCTGTTCTTCTGGGTCTTCATCGACCAGATCATGGATCGTGCACGGCATTGTAGCCGGAGCTGCAATTGCTGCGGCCATTGGCG CTGGTGCTTATCTGGTTCGGTACAGAAAGTTTAGGAGCCAGGTTGTTGGTATCATACCCGCCCGCTATGCTTCTTCTCGATTTGAAGGCAAGCCACTTGT TAATATCCTTGGCAAACCCATGATCCAGAGAACTTGGGAAAGGGCCAAACTGGCAACTACACTGGATCATATAGTTGTGGCAACAGATGATGAAAAAATA GCAGAATGTTGTCGAGGATTTGGTGCTGATGTGGTAATGACTTCAGAATCTTGTCGAAATGGTACAGAACGGTGCAATGAAGCACTTCAAAAACTAGATA AGAAATATGATGTGGTTGTCAATATTCAAGGGGATGAGCCTCTCATTGAACCTGAGATAATAGACGGAATTGTTAAATCCCTGCAGGCAGCCCCGGATGC TGTGTTTAGCACAGCTGTAACCTCTTTGAAGCCTGAAGATGCATTTGATCCCAATCGAGTGAAATGTGTGGTGGACAATCAAGGCTACGCTATCTATTTT TCAAGGGGATTAATTCCTTACAACAAATCGGGGAAGGTCAATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAGTTATGATGCAAAGTTTCTGA AGATATATCCTGAGCTTCAACCAACTCCACTGCAACTGGAAGAGGATCTGGAACAGCTTAAGGTCCTGGAAAATGGTTATAAAATGAAGGTCATAAAAGT TGACCATGAGGCGCATGGTGTCGACATTCCAGAAGATGTTGAAAAGATAGAAACTTTGATGCGTGAGCAAAACTTGTCTTAG
AA sequence Show only first row Show all	>Potri.011G120100.1 pacid=42781861 polypeptide=Potri.011G120100.1.p locus=Potri.011G120100 ID=Potri.011G120100.1.v4.1 annot-version=v4.1 MSMCSSCSSGSSSTRSWIVHGIVAGAAIAAAIGAGAYLVRYRKFRSQVVGIIPARYASSRFEGKPLVNILGKPMIQRTWERAKLATTLDHIVVATDDEKI AECCRGFGADVVMTSESCRNGTERCNEALQKLDKKYDVVVNIQGDEPLIEPEIIDGIVKSLQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNQGYAIYF SRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELQPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDIPEDVEKIETLMREQNLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.011G120100 [exp]	0	1
AT3G16850			Pectin lyase-like superfamily ...		Potri.008G211500 [exp]	4.69	0.7749
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.009G148600 [exp]	12.12	0.7749
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	12.72	0.7961	ACCC.1
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.005G141900 [exp]	15.36	0.8128	CYCD3.4
AT2G02050			NADH-ubiquinone oxidoreductase...		Potri.008G141900 [exp]	16.15	0.8044
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.016G139600 [exp]	37.10	0.7931	PAA1.4
AT5G43960			Nuclear transport factor 2 (NT...		Potri.010G065500 [exp]	38.57	0.7463
AT1G76400			Ribophorin I (.1)		Potri.005G255000 [exp]	44.35	0.7940
AT2G37975			Yos1-like protein (.1)		Potri.008G063000 [exp]	55.08	0.7635
AT3G06700			Ribosomal L29e protein family ...		Potri.002G196800 [exp]	60.66	0.7191

Compare expression of checked genes

Potri.011G120100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.