Plant FIBer expression Database

Potri.011G121100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15380 1135 / 0 Plasma-membrane choline transporter family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036620
[exp]
1215 / 0 AT3G15380 1154 / 0.0 Plasma-membrane choline transporter family protein (.1)
Lus10035837
[exp]
568 / 0 AT3G15380 561 / 0.0 Plasma-membrane choline transporter family protein (.1)
Lus10025051
[exp]
45 / 0.0002 AT4G38640 674 / 0.0 Plasma-membrane choline transporter family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04515 Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence
>Potri.011G121100.3 pacid=42781739 polypeptide=Potri.011G121100.3.p locus=Potri.011G121100 ID=Potri.011G121100.3.v4.1 annot-version=v4.1
ATGAGAGGACCCTTAGGGGCAGTGATAGGGAGGTACCCTTCAAGTGATGGGAGTACTCAAGTTGGTGGAATCATTAGACACAACAGGAAATGTCGAGATG
TTGCATTTCTTGTTATTTTCATAGCATTCTGGGTTGCTATGGTTGTTAACTCTAGCTTTGGATTCAACAAAGGAAACCCTTTAAGGCTTACTTATGGGCT
GGACTACAAAGGAAATGTTTGTGGTGACAGACATGCACACCCTGGTCTTCGTGAATTGGAGCTTACATATTGGTTAAATCCTAACCAGGTCTATCTTAGT
GGTTTGAAGAACAGCCAATTCAAGTTGGCTAATGCTCGGACTATATGCTTGTTGGACTGTCCCATTCCCTCAGAAGATGCACTTAATTGGGTGTGTGATT
ATCCAGAAGGAGAAATCCGTCTCTCTGTAGATGATTGGATTGATAGGAACTATGACTATTTTGAGTTCCTCACTCCTGAAATGAGAAACACCTCTCTTCA
ACTTCAGGGTCCCTGTTACCCTGTGATATTCCCAAGTGTAAATGTTTATTGGAGATGCCAATATGTTGCTCGTGCATCAAATGTATCTATGCGACATTGG
CAGCAAATGGGTGGAGTGAACATCAATGAGGACATTATAATAGACAAATCCATTCACAGGTCCATCAATGCTCGGTCATCAGTTTTGAAGAGATACGTGG
CTGACATTGAAAAGTCCTGGCCAGTATTGATTGTTTGTGGAGGACTCTTGCCACTATTTGTATCAGTGATCTGGCTACTGCTGATTCGGCATTTTGTTGC
TGCAATGCCTTGGATAACAGTTGCCCTTTTTAATATTCTCATTATTGCAGTAACAATGTTTTACTACCTTAAAGCTGGATGGATTGGGAATGATGCGATC
TCCCCTATCATTGGTGCACATGATCCGTACTACCACGTGTTTGGACGGGAGCTAAATCATCTCCGCGCTGCTGCTGTTCTGATGACTTTTATAATGGTTG
TTTCCATCCTTACATCAATTGCCATAGTCCACCGAATCCTTATGGCTACATCTGTCCTCAAGGTTGCTGCAAAGGTCATAGGAGAAGTTCAAGCACTCAT
AATCTTTCCAGTGATGCCATATGCTATCCTTGGAATCTTTTATATGTTCTGGTTTGCAGCTGCATTCTATTTGTTTAGTTCCGGCCAGATTGTCCAGAAC
AATTGCAACTCCAATTGCTGTGCATATGATCTTGTATCAAAAAGGGTCAACTGTGATCGTTGCTGTGGTTATAGCATCCATTATACTCCCCACATATCAA
TTGCAATTTTTTTCCACCTATTTGGTTGTTACTGGGCCACCCAATTCTTTATAGCTTGCTCTTCAACTGTGATTGCGGGTTCCGTTGCCTCCTATTATTG
GGCTCGTGGTGAGACATCGCCAGAGATTCCATTCCTACCTGTTTTTTCCTCTATGAAGCAGCTTATACGGTACAGCCTTGGTTCTGTGGCTCTTGGCTCC
TTGGTGTTGTCGTTTGTGGAATCTGTTCGCTTCATACTTGAGTCAATTCGTCGCAAACTGAAAGTTGCTAATACTACTCCTGAAAGCTGTATGGGAAGGA
CAGCATATCACACTTCTCGGTTTTGTTTTCAATGTATTGAGTGGATTATAAGATCTGTGAACCGCAATGCTTATATAATGATAGCTATAACAGGTAAAAG
CTTCTGCAGAGCTTCTGCAATTGCAACTGAATTGATCATCAGCAACATCCTTAGAATAGGGAGGGTGAATGTGATTGGAGATGTCATTCTATATCTTGGA
AAGTTATGTGTCAGCCTCTCAAGTGCACTTTTTGCTTTCCTGATGTTGGATACCCACAAATATAGATCAGCTCATAACAAGATTTCCTCCCCACTGCTTC
CTGTGCTGGTCTGCTGGGCTCTCGGTTACGTTGTTGCAACTCTCTTCTTTGCTGTGGTGGAGATGTCAATTGATGCTATCATTCTTTCATTCTGTCAGGA
TTCGGAGGAGCACCAGGGGACAGCACAATATGCTCCTCCTCTTCTGATGGAGACACTGGGTGATCAAAATGAGATGCAGAGACTTACTCAATGA
AA sequence
>Potri.011G121100.3 pacid=42781739 polypeptide=Potri.011G121100.3.p locus=Potri.011G121100 ID=Potri.011G121100.3.v4.1 annot-version=v4.1
MRGPLGAVIGRYPSSDGSTQVGGIIRHNRKCRDVAFLVIFIAFWVAMVVNSSFGFNKGNPLRLTYGLDYKGNVCGDRHAHPGLRELELTYWLNPNQVYLS
GLKNSQFKLANARTICLLDCPIPSEDALNWVCDYPEGEIRLSVDDWIDRNYDYFEFLTPEMRNTSLQLQGPCYPVIFPSVNVYWRCQYVARASNVSMRHW
QQMGGVNINEDIIIDKSIHRSINARSSVLKRYVADIEKSWPVLIVCGGLLPLFVSVIWLLLIRHFVAAMPWITVALFNILIIAVTMFYYLKAGWIGNDAI
SPIIGAHDPYYHVFGRELNHLRAAAVLMTFIMVVSILTSIAIVHRILMATSVLKVAAKVIGEVQALIIFPVMPYAILGIFYMFWFAAAFYLFSSGQIVQN
NCNSNCCAYDLVSKRVNCDRCCGYSIHYTPHISIAIFFHLFGCYWATQFFIACSSTVIAGSVASYYWARGETSPEIPFLPVFSSMKQLIRYSLGSVALGS
LVLSFVESVRFILESIRRKLKVANTTPESCMGRTAYHTSRFCFQCIEWIIRSVNRNAYIMIAITGKSFCRASAIATELIISNILRIGRVNVIGDVILYLG
KLCVSLSSALFAFLMLDTHKYRSAHNKISSPLLPVLVCWALGYVVATLFFAVVEMSIDAIILSFCQDSEEHQGTAQYAPPLLMETLGDQNEMQRLTQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15380 Plasma-membrane choline transp... Potri.011G121100
[exp]
0 1
AT5G56590 O-Glycosyl hydrolases family 1... Potri.018G068600
[exp]
1.00 0.8693
AT5G58090 O-Glycosyl hydrolases family 1... Potri.018G150400
[exp]
4.35 0.7896
AT5G55230 ATMAP65-1 microtubule-associated protein... Potri.001G356500
[exp]
4.58 0.8484
AT1G66150 TMK1 transmembrane kinase 1 (.1) Potri.008G137801
[exp]
5.29 0.8139
AT5G04885 Glycosyl hydrolase family prot... Potri.008G013500
[exp]
5.47 0.8257
AT5G07590 Transducin/WD40 repeat-like su... Potri.003G151400
[exp]
7.07 0.8573
AT1G68560 AXY3, TRG1, XYL... thermoinhibition resistant ger... Potri.010G125800
[exp]
7.48 0.8474 XYL1.1
AT4G12110 ATSMO1-1, SMO1-... sterol-4alpha-methyl oxidase 1... Potri.003G116000
[exp]
8.94 0.7866 Pt-SMO1.1
AT3G22190 IQD5 IQ-domain 5 (.1.2) Potri.001G215200
[exp]
8.94 0.7700
AT1G66250 O-Glycosyl hydrolases family 1... Potri.017G130200
[exp]
10.39 0.7814

Potri.011G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.