Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16930 148 / 1e-39 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59200 139 / 4e-36 F-box/RNI-like superfamily protein (.1) AT4G14103 138 / 4e-36 F-box/RNI-like superfamily protein (.1.2) AT5G53635 136 / 3e-35 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59240 133 / 6e-34 RNI-like superfamily protein (.1) AT4G14096 132 / 7e-34 F-box/RNI-like superfamily protein (.1) AT4G26340 131 / 9e-34 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56380 129 / 1e-32 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56400 128 / 3e-32 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G66290 127 / 3e-32 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121500 [exp] 704 / 0 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.014G163866 [exp] 387 / 1e-133 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 119 / 5e-29 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 102 / 2e-23 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024600 [exp] 90 / 5e-19 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.010G134200 [exp] 89 / 7e-19 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 82 / 1e-16 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 82 / 1e-16 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 82 / 1e-16 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034414 [exp] 78 / 2e-15 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 76 / 3e-15 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 76 / 2e-14 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10018509 [exp] 71 / 6e-13 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10006866 [exp] 69 / 4e-12 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10028366 [exp] 65 / 1e-11 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 65 / 4e-11 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10008295 [exp] 59 / 5e-10 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10013071 [exp] 61 / 1e-09 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10020292 [exp] 60 / 2e-09 AT1G60410 76 / 9e-15 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.011G121400.1 pacid=42781126 polypeptide=Potri.011G121400.1.p locus=Potri.011G121400 ID=Potri.011G121400.1.v4.1 annot-version=v4.1 ATGACCAAAGACGATAGACGAAAACGCTGCAAGGAGGTGAATAAAGATATGATTAGTGACTTGCCTAATGTGATTATTGGTCATATACTCTCGTTTCTTC CTACTAAAGATGCTCTGTGTACCTGCATTTTGTCCAAAAGTTGGAGAGAACTCTGGAGATCACTTTCAAATTTTGATTTTGATGATCGCACATGGAAAAG TAAGATCATCTTTGGGAATTTCATGGATAGGTTTTGTTACCTTCACAACTCTCGTGAAAACTCTATTACAAAATTTCGTCTCAGAGTAAATGGAAGCTAT CCTTCTTCCCGTATGAGTGCGTGGATTTCTGCTGCAATTAAGGACAATCTTGAGGAGCTTAAACTTTGGATATACACAGCGGATCATGTTCCGTTGCCTC GGAGAATTTTTAGCTGTGAGAAGTTAGTGATTTTGGACCTTGGTTATCGAATTGATACTGATCTTCTTGGTGTTGGTGTACACTTTCCATGTCTCAAGGT CCTTCATCTTCAAGAACTCCCGATGCTTGATGATCATGCTTCCATAGAGAAACTATTAGCAGGTTCCCCAGTCCTTGAAGAACTGAAAATCGAACATGAA GATTGTGAATCCAGGAACGTTTTACGTATATGCTCAAGCTCACTCAAACGCTTGATCATAAGATTCCCATTCGTTGCTTATGACGAGAACGATCCTGGTT GCAGAGAACTTACTCTTGATACCCCAAACCTCGAGCTTCTTAAACTAACTGATCTCGTGTCCGAGAAGTTAAACATGCTGCAGATTCCGTACTCACTAGT CGAGGCAGCTCTCAGTGTTGCTTATAAACATGTCTTCACCATACAAGTAGATGATTATATTGACATGGCGGTTCAGCTTTTGAGACCGATCATGACGATT GTCAAGATCTTACGCTTGTGTGATACTACTATGAGGACATCCCCTTTACAGACGTTATCAGACGCAGTTCATAAGAAGTTGCCTTGTGTCGGCAATCTTC CTGATTTTCAGAATTTGACTCGTTTGGAGATTGAAGCTAGTGGAAATGATCGTTGGCTGGTTTTGCATGAGATACTCAAATGCTCTCCTAAGTTGGAAGT CTTCATCTTATACAAGGACTCGACAGAGAAAACTCCCAGATGGCGAAATCCTGAATTCGTGCCCCGGTGCTTAAGGTCATCCCTTAAGGTGATCGAGTAT GTAGGTTTTGAAAGCGAGTTGGGGGAGATAGAAATGGCTGAATATCTCATAAAGAATGCGTTGGTCTTGGAGAAGATGACTATCGAATATGGATGGAAAA TGATTCATGATTTTAAAGAGCGTGTTGCCGAGAGGTTGACAGAGTGTCGTCGGGGCTCCACAGCATGTCGAATTGTATTTTCACCTTGA
AA sequence Show only first row Show all	>Potri.011G121400.1 pacid=42781126 polypeptide=Potri.011G121400.1.p locus=Potri.011G121400 ID=Potri.011G121400.1.v4.1 annot-version=v4.1 MTKDDRRKRCKEVNKDMISDLPNVIIGHILSFLPTKDALCTCILSKSWRELWRSLSNFDFDDRTWKSKIIFGNFMDRFCYLHNSRENSITKFRLRVNGSY PSSRMSAWISAAIKDNLEELKLWIYTADHVPLPRRIFSCEKLVILDLGYRIDTDLLGVGVHFPCLKVLHLQELPMLDDHASIEKLLAGSPVLEELKIEHE DCESRNVLRICSSSLKRLIIRFPFVAYDENDPGCRELTLDTPNLELLKLTDLVSEKLNMLQIPYSLVEAALSVAYKHVFTIQVDDYIDMAVQLLRPIMTI VKILRLCDTTMRTSPLQTLSDAVHKKLPCVGNLPDFQNLTRLEIEASGNDRWLVLHEILKCSPKLEVFILYKDSTEKTPRWRNPEFVPRCLRSSLKVIEY VGFESELGEIEMAEYLIKNALVLEKMTIEYGWKMIHDFKERVAERLTECRRGSTACRIVFSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16930			F-box/RNI-like/FBD-like domain...		Potri.011G121400 [exp]	0	1
AT3G42880			Leucine-rich repeat protein ki...		Potri.003G068800 [exp]	3.60	0.6120
					Potri.010G154250 [exp]	5.09	0.5929
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.008G125300 [exp]	7.74	0.5914	CYP96.3
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023002 [exp]	18.13	0.5677
					Potri.016G039401 [exp]	18.33	0.5095
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	26.22	0.5845
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	27.71	0.5496
AT1G43730			RNA-directed DNA polymerase (r...		Potri.016G103750 [exp]	29.56	0.5292
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.018G062800 [exp]	30.33	0.5292
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Potri.008G134400 [exp]	33.27	0.5013	Pt-UBC.3

Compare expression of checked genes

Potri.011G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.