Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) AT1G16930 139 / 3e-36 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59200 138 / 1e-35 F-box/RNI-like superfamily protein (.1) AT5G53635 135 / 5e-35 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G14096 133 / 5e-34 F-box/RNI-like superfamily protein (.1) AT3G59240 133 / 7e-34 RNI-like superfamily protein (.1) AT1G58310 130 / 6e-33 F-box/RNI-like superfamily protein (.1) AT1G66320 128 / 2e-32 F-box/RNI-like superfamily protein (.1) AT3G58880 124 / 5e-31 F-box/RNI-like superfamily protein (.1) AT1G66290 124 / 7e-31 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121400 [exp] 704 / 0 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G163866 [exp] 348 / 3e-118 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 104 / 5e-24 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 95 / 9e-21 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104300 [exp] 92 / 4e-20 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 89 / 6e-19 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024600 [exp] 88 / 2e-18 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.010G134200 [exp] 82 / 8e-17 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.001G401850 [exp] 79 / 3e-16 AT5G53592 44 / 1e-05 FBD-like domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 73 / 2e-13 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10034415 [exp] 66 / 8e-12 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 66 / 1e-11 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 66 / 2e-11 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 65 / 6e-11 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 63 / 2e-10 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10024701 [exp] 59 / 2e-10 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10008295 [exp] 59 / 3e-10 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10041818 [exp] 61 / 8e-10 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10029953 [exp] 60 / 2e-09 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.011G121500.2 pacid=42781557 polypeptide=Potri.011G121500.2.p locus=Potri.011G121500 ID=Potri.011G121500.2.v4.1 annot-version=v4.1 ATGGCCAAAGACGATAAACGAAAACGCTGCGAGGAGGTGAATAAAGATATGATTAGTAGCTTGCCTAATGTGATAATTGGTCATATACTCTCGTTTCTTC CTACTAAAGATGCTCTGTGTACCTGCATTTTGTCCAAAAGTTGGAGAGAACTCTGGAGATCACTTCCCAATTTTGATTTTGATGATCGCACATCGAAAAG TAAGATCATCTTTGGGAATTTCATGGATAGGTTCTTTTATGTTCATAACTCACGTGAAAACTCCATTACAAAATTTCGTCTCCGCGTACATGGAAACTAT CCTTCTTCCCGTTTAAGTCAATGGATTGATGCAGCGATTAAGGACAATATTGAGGAGCTTATACTTTGGATACCCCTACTTACTCATGTTCCGTTGCCTC GGAGAGTTTTTAGTTGTGAGAAATTAGTAGTTTTGAACCTTAGTTATGGAATTGCTATTGATCTTCTTGGTGTTGGTGTGCGCTTTTCATGTCTCAAGGT CCTTCATCTTGAAGGACTCCCGATGCTTGACGATCTTGCTTCCATAGAGAAACTATTAGCAGGTTCCCCAGTCCTTGAAGAACTGAAAATCGAACATGAA TATTGTCAATCCAGGAACGCTTTACGTGTATGCTCAAGCTCACTGAAACGCTTGACCATAAGATTCACGCGTATTCGTTATTACAGGAAGGATCCTGGTT GCAGAGCACTCACTCTTGATACCCCAAACCTAGAGCTTCTTATACTAACTGATTTCGTGTCCGAGGAGTTAAACATGCAGCAACTTCCGTGCTCACTAGT CGAGGCATCCATCAGTGTTGCTTTTACACATTTCTTCATCATACAACTAGATAGTTATATTGACATGGCGGTTCAGTTCTTGAGACTGATCATGCCTATT GTCAGGATCTTACGCTTGTGTGGGACTACTATGAGGATTTTATCAAACGCGGTTCGTAAGAAGTTGCCTTGCTTCGAAGATCTGCCTAATTTTCAGAACT TGACTCGTTTGGAGATTGAAGCTAGTGGAGATTGTCGTTGGATGGTTTTGCATGAGATACTCAAATGCTCTGTTAAGCTGGAAGTCTTCATCTTATACAA GGACAAGGCTAAGGATACTCCCAAATGGCGAAGTCTTGTATGCCTTAATTCTTCGGCAATTCCCAAATGGCGAAATCCTGAATTCGCGCCACGGTGCATG AGGTCAAGCCTTAAAGTGATTGAGTGTGTAGATTTTGAAGGGGATTTCTCGGAGATAGAAATGGCGGAATATTTCATAAAGAATGCACTGGTCTTGGAGA AGATGGCTATCAGATTTGGATGGGGCATGACTCATAATTCAAAAGAACGTGTTGCCAAGAGGCTGTCAGGGTGTCAAATAGGCTCCGAAGCATGTCGAAT TACATTTTCATCACCTTGA
AA sequence Show only first row Show all	>Potri.011G121500.2 pacid=42781557 polypeptide=Potri.011G121500.2.p locus=Potri.011G121500 ID=Potri.011G121500.2.v4.1 annot-version=v4.1 MAKDDKRKRCEEVNKDMISSLPNVIIGHILSFLPTKDALCTCILSKSWRELWRSLPNFDFDDRTSKSKIIFGNFMDRFFYVHNSRENSITKFRLRVHGNY PSSRLSQWIDAAIKDNIEELILWIPLLTHVPLPRRVFSCEKLVVLNLSYGIAIDLLGVGVRFSCLKVLHLEGLPMLDDLASIEKLLAGSPVLEELKIEHE YCQSRNALRVCSSSLKRLTIRFTRIRYYRKDPGCRALTLDTPNLELLILTDFVSEELNMQQLPCSLVEASISVAFTHFFIIQLDSYIDMAVQFLRLIMPI VRILRLCGTTMRILSNAVRKKLPCFEDLPNFQNLTRLEIEASGDCRWMVLHEILKCSVKLEVFILYKDKAKDTPKWRSLVCLNSSAIPKWRNPEFAPRCM RSSLKVIECVDFEGDFSEIEMAEYFIKNALVLEKMAIRFGWGMTHNSKERVAKRLSGCQIGSEACRITFSSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14103			F-box/RNI-like superfamily pro...		Potri.011G121500 [exp]	0	1
					Potri.007G061821 [exp]	1.00	0.7654
					Potri.007G062362 [exp]	55.92	0.6265
AT1G42960			unknown protein		Potri.005G099233 [exp]	57.05	0.6170
AT3G07820			Pectin lyase-like superfamily ...		Potri.007G035800 [exp]	119.93	0.5712
					Potri.008G112166 [exp]	231.46	0.5246

Compare expression of checked genes

Potri.011G121500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.