Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53760 721 / 0 ATMLO11, MLO11 MILDEW RESISTANCE LOCUS O 11, Seven transmembrane MLO family protein (.1.2) AT1G26700 710 / 0 ATMLO14, MLO14 MILDEW RESISTANCE LOCUS O 14, Seven transmembrane MLO family protein (.1) AT1G11000 375 / 1e-123 ATMLO4, MLO4 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1) AT2G44110 333 / 5e-108 ATMLO15, MLO15 MILDEW RESISTANCE LOCUS O 15, Seven transmembrane MLO family protein (.1.2) AT4G02600 320 / 8e-103 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) AT1G61560 313 / 2e-99 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) AT2G33670 310 / 6e-99 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) AT2G17430 303 / 5e-96 NTA, ATMLO7, MLO7 NORTIA, MILDEW RESISTANCE LOCUS O 7, Seven transmembrane MLO family protein (.1) AT2G17480 299 / 6e-94 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) AT1G42560 294 / 1e-93 MLO9, ATMLO9 ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, Seven transmembrane MLO family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G402400 [exp] 916 / 0 AT5G53760 828 / 0.0 MILDEW RESISTANCE LOCUS O 11, Seven transmembrane MLO family protein (.1.2) Potri.004G218500 [exp] 389 / 6e-129 AT1G11000 735 / 0.0 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1) Potri.001G078800 [exp] 335 / 4e-109 AT4G24250 549 / 0.0 MILDEW RESISTANCE LOCUS O 13, Seven transmembrane MLO family protein (.1) Potri.013G069900 [exp] 331 / 5e-107 AT4G02600 720 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Potri.009G011900 [exp] 332 / 3e-106 AT1G61560 603 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.005G111400 [exp] 323 / 1e-103 AT1G11000 434 / 8e-147 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1) Potri.017G000900 [exp] 312 / 8e-100 AT4G02600 639 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Potri.017G000800 [exp] 311 / 1e-99 AT4G02600 640 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Potri.007G064200 [exp] 311 / 7e-99 AT2G39200 502 / 4e-173 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032669 [exp] 704 / 0 AT5G53760 777 / 0.0 MILDEW RESISTANCE LOCUS O 11, Seven transmembrane MLO family protein (.1.2) Lus10043085 [exp] 696 / 0 AT5G53760 776 / 0.0 MILDEW RESISTANCE LOCUS O 11, Seven transmembrane MLO family protein (.1.2) Lus10026276 [exp] 315 / 1e-100 AT4G24250 576 / 0.0 MILDEW RESISTANCE LOCUS O 13, Seven transmembrane MLO family protein (.1) Lus10001336 [exp] 310 / 1e-98 AT4G02600 644 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Lus10023506 [exp] 310 / 4e-97 AT2G39200 731 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10040388 [exp] 298 / 3e-93 AT2G39200 735 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10030729 [exp] 293 / 1e-92 AT2G33670 628 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) Lus10041410 [exp] 293 / 3e-91 AT1G61560 769 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10019630 [exp] 292 / 7e-91 AT2G17480 711 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10036519 [exp] 289 / 1e-89 AT1G61560 763 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03094 [poplar] [flax] Mlo Mlo family
Representative CDS sequence Show only first row Show all	>Potri.011G121600.6 pacid=42781661 polypeptide=Potri.011G121600.6.p locus=Potri.011G121600 ID=Potri.011G121600.6.v4.1 annot-version=v4.1 ATGGAAGAAGATACAAAAGAAACGAGATCCTTGGCCTTAACTCCAACATGGTCAGTTGCAACTGTGTTGACAATCTTTGTGGTTGTTTCTCTGATTGTGG AGCGCTCAATTCACAGACTAAGTAGTTGGTTGCGGGAAACCAATCGGAAACCTTTGCTTGCAGCTGTGGAGAAGATGAAAGAAGAGTTGATGCTGCTTGG ATTCATATCACTTCTTTTAACAGCTACCTCAAGCACCATAGCCAATATTTGCATTCCATCAAAGTTCTATGAAGGCAATTTTGCTTCTTGCACGAGTCCA GAGAATGATGAGGAAATTAAACAAAATTCTTCCGAGGGACGTAAACTAGTGATGCTTCCTGTTCTTCCTCATCCACTTCGAAGAATGTTGAATGGCTTGG ATTGGAATACCTGCGAAAAGGGATATGAGCCATTCGTGTCATATCAAGATCTCGAGCGGTTGCATCGCTTCATTTTCGTCATGGCAATCACACACATTTC TTACAGTTGCTTAACAATGCTGCTGGCAATTGTGAAGATTCATAGTTGGAGAGTATGGGAGGATTTGGCTCGTTTGGACTGCCGTGATGTATCAACAGAA ATCAATAGAGAAAAGACATTGCGAAGGCAAACAACCTTCGCAAGACAACGTACATCAAGCCCTTTGGTCAAGAATAGTTTTCTTATCTGGGTGACATGTT TCTTTCGGCAATTTGGACCTTCAGTGGCTCGCACAGACTACCTCACTCTTCGCAAGGGCTTCATCATGAATCACAACCTCTTATTGAAATTCGATTTTCA CAGCTACATGATTCGCTCTATGGAAGAAGAATTCCAGAGAATTGTTGGTGTGAGTGGTCCATTGTGGGGATTTGTTGTTGCATTCATGCTGTTTAATGTG GAAGGATCTAATCTCTATTTCTGGATATCCGTCGTTCCAATCACTCTTGTTCTTGTAGTCGGTGCAAAGCTACAACATGTTATTGCGACCTTGACATTAG AGACTGCTGGCCTTACTGGACACTCTGTAGAAGGGAAGCTGAGGCCTCGAGATGATCTTTTCTGGTTCAAGAAGCCAGAACTGTTTCTGCCATTGATCCA TTTTATCCTGTTCCAGAATGCATTTGAATTGGCTTCATTCTTTTGGTTTTGGTGGCAATTTGGGTACAGATCCTGCTATATTAGGAACCATTTGCAGGTG TACATACGACTTGTGTTGGGGTTTGCTGGGCAGTTCCTCTGCAGCTACAGCACCTTGCCACTTTATGCACTTGCTACCCAGGAACATGCTGGGCAGTTCC TCTGCAGCTACATCACCTTGCCACTTTATGCACTTGCTACCCAGATGGGAACAAACTATAAGCCGGCATTATTTCCTCAAAGAATAAGGGACACAATCCA TGGGTGGGGGAAAGCAGCAGCTAGGGGGAAGAGAAGGCATGGAATTGTCACAGATGATTCTACAATGCACAGAGACACAAGCACATTAATGTCAGAGGAA GACAATCATCATTTGCTTGATATTCCTGAGAATGATGCAGATCCAGTCACTCAAATCGAGTTGCAGCCAGCTTCTTTTATTTCAGTTAGTCCTACCACAG TTGCCAATGAAACTTCAAGCGGGGTAGCTACTCCTTTCCTTCGACACTCAGCTTCTGTTGCTTCATCAGAAACATCAAATTTTCACGTGGAAGATATTCG TAGATCATCTTCTATGCCAGTTAGAAGGTAG
AA sequence Show only first row Show all	>Potri.011G121600.6 pacid=42781661 polypeptide=Potri.011G121600.6.p locus=Potri.011G121600 ID=Potri.011G121600.6.v4.1 annot-version=v4.1 MEEDTKETRSLALTPTWSVATVLTIFVVVSLIVERSIHRLSSWLRETNRKPLLAAVEKMKEELMLLGFISLLLTATSSTIANICIPSKFYEGNFASCTSP ENDEEIKQNSSEGRKLVMLPVLPHPLRRMLNGLDWNTCEKGYEPFVSYQDLERLHRFIFVMAITHISYSCLTMLLAIVKIHSWRVWEDLARLDCRDVSTE INREKTLRRQTTFARQRTSSPLVKNSFLIWVTCFFRQFGPSVARTDYLTLRKGFIMNHNLLLKFDFHSYMIRSMEEEFQRIVGVSGPLWGFVVAFMLFNV EGSNLYFWISVVPITLVLVVGAKLQHVIATLTLETAGLTGHSVEGKLRPRDDLFWFKKPELFLPLIHFILFQNAFELASFFWFWWQFGYRSCYIRNHLQV YIRLVLGFAGQFLCSYSTLPLYALATQEHAGQFLCSYITLPLYALATQMGTNYKPALFPQRIRDTIHGWGKAAARGKRRHGIVTDDSTMHRDTSTLMSEE DNHHLLDIPENDADPVTQIELQPASFISVSPTTVANETSSGVATPFLRHSASVASSETSNFHVEDIRRSSSMPVRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.011G121600 [exp]	0	1
AT1G53470		MSL4	mechanosensitive channel of sm...		Potri.005G246600 [exp]	5.74	0.8531
					Potri.010G132000 [exp]	8.48	0.8847
AT1G16310			Cation efflux family protein (...		Potri.010G172600 [exp]	9.89	0.8050
AT4G21310			Protein of unknown function (D...		Potri.004G031200 [exp]	9.89	0.8958
AT4G27220			NB-ARC domain-containing disea...		Potri.001G405100 [exp]	10.24	0.8396
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G151000 [exp]	10.67	0.8868
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Potri.011G117800 [exp]	10.81	0.8474
					Potri.001G098901 [exp]	11.09	0.8107
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.002G145400 [exp]	12.00	0.8430
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	17.49	0.8795

Compare expression of checked genes

Potri.011G121600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.