Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15410 749 / 0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G56040 115 / 9e-27 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G17440 114 / 1e-26 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT1G12970 108 / 3e-25 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT2G33170 110 / 5e-25 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G35470 108 / 7e-25 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G11330 107 / 1e-24 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT4G20140 107 / 4e-24 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G05850 105 / 5e-24 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G11010 105 / 1e-23 AtRLP34 receptor like protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G028366 [exp] 126 / 3e-30 AT1G45616 316 / 5e-93 receptor like protein 6 (.1) Potri.012G009200 [exp] 121 / 2e-28 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.010G046500 [exp] 112 / 3e-26 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.007G065000 [exp] 109 / 4e-25 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 109 / 6e-25 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.019G021700 [exp] 109 / 1e-24 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 109 / 1e-24 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G007600 [exp] 108 / 2e-24 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.015G083800 [exp] 107 / 3e-24 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043086 [exp] 451 / 3e-155 AT3G15410 497 / 2e-173 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10032667 [exp] 356 / 3e-119 AT3G15410 389 / 1e-132 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10032668 [exp] 260 / 2e-83 AT3G15410 261 / 2e-84 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10023323 [exp] 120 / 4e-28 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10000900 [exp] 111 / 1e-25 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10035976 [exp] 110 / 2e-25 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10036251 [exp] 110 / 5e-25 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10013689 [exp] 107 / 1e-24 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10016684 [exp] 108 / 2e-24 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10017948 [exp] 107 / 2e-24 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13306 [poplar] [flax] LRR_5 BspA type Leucine rich repeat region (6 copies) CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G121700.1 pacid=42781615 polypeptide=Potri.011G121700.1.p locus=Potri.011G121700 ID=Potri.011G121700.1.v4.1 annot-version=v4.1 ATGGATCGCGTTCTGAAAGCTGCAAGAAGCTCCGGTTCTCTTAACCTCTCCAACCGCTCTCTCAGCGAAGTACCTGATGAGGTCTACAAAATTTTGGACG CCGTTGGTGAAGGTGAAAAATGGTGGGAGAATGTGGAGCTACAAAAGCTGATTTTGGCTCATAATAATATTGAGGCAATAAAGGAAGACCTTAAGAATTT ATCTCAACTAACTGTGTTGAATGTTAGCCATAACAAGCTCTCTGCGCTTCCAGCTGCAATAGGAGAGCTCCCTATGCTTAAGTTATTAGATGTTTCTTTT AACTTGATTCAGAAAGTACCTGACGAAATCGGATCAGCCACTTCTCTCGTCAAGTTTGATTGTTCAAGCAATCAGCTGAGGGAGCTTCCGAGCTCACTAG GAGGATGTTTGGCTTTATCTGACTTGAAGGCATCAAACAACTCTATCACCAGCTTGCCTGAAGATCTAGCAAGGTGTTCAAAACTGACAAAAGTAGATGT GGAGGGAAATAAGTTGAAGGTGTTATCTGGGAATTTGATGGCATCGTGGACCATGCTTACCGAATTTAATGCATCAAAAAACTTGCTGAGTGATATACCA GATAACTTTGGAAGCCTTTCACGACTCATCCGCCTTGACCTTCATCAGAACAGAATCTCAACAATCCCTCCCTCAATAATGGGTTGTTGTTCCCTTGCAG AATTCTATATGGGGAACAACGCGCTGTCTACCTTACCTGCAGAAATAGGGGCACTTTCTCGATTAGGGACACTGGATCTCCATTCAAACCAGTTGAAGGA GATTCCTGCGGAGGCATGTAAATTACAGCTTTCAATGCTGGATCTTTCAAATAATTCTTTGACTGGATTGCCCCCTGAACTTGGGAAGATGACAACTCTA AGGAAACTCCTGCTAAATGGCAATCCATTGCGAACTCTTCGAAGCTCATTGGTTTCTGGACCCACGGCCACTTTATTGAATTATCTTCGAAGTAGACTCT CTGAAGGAGAAGATTCTAAAGCAACTACTCCAGCGAAGAAGGATTTAATTTCCATGACAGCTAGATTGTCTGTCAGTTCAAAGGAACTCTCTCTACAAGG GCTGGGTTTGAGTGCTGTCCCATCAGAAGTATGGGAATCAAATGAAATTGTAAAGGTTGATCTATCCAGGAATTCTATTCAAGAGCTGCCACTTGAACTC TCCTTGTGTGTTTCCCTTCAGTGTTTGATTTTATCCAGAAACAAGATTAGTGACTGGCCATGTGCAATTTTGAAATCACTTCCCAATCTTATATGTTTGA AGCTGGACAACAATGCACTTACACAGATTCCATCAGATGGATTTCAAGCAGTCCCTATGCTTCAGATTCTGGATCTCAGTGGCAATCCAGCTTCACTGCT CGGTCATCCAGCATTTTCTAGCTTGCCTCATTTGAAAGAGCTTTACCTCAGACAAGTTCAATTACGTGAAATCCCATCAGATATATTGAGCTTACAGCAA CTGCAAATCCTGAATTTGAGCCAAAACTCACTTCACTCAATTCCAGAGGGGTTAAAAAATCTCACCTCTCTCACTGAGCTTGACCTGTCTGACAATAATA TTTCAGCACTTCCTCCGGAGCTGGGTTTGCTTGAGCCGAGCCTCCAAGCCTTAAGACTTGATGGAAATCCATTGAGAAGCATCCGGAGAACAATTTTGGA TAGGGGAACTAAAGCGGTTCTGAAATATTTGATGGACAAAATACCAGAGCACTAG
AA sequence Show only first row Show all	>Potri.011G121700.1 pacid=42781615 polypeptide=Potri.011G121700.1.p locus=Potri.011G121700 ID=Potri.011G121700.1.v4.1 annot-version=v4.1 MDRVLKAARSSGSLNLSNRSLSEVPDEVYKILDAVGEGEKWWENVELQKLILAHNNIEAIKEDLKNLSQLTVLNVSHNKLSALPAAIGELPMLKLLDVSF NLIQKVPDEIGSATSLVKFDCSSNQLRELPSSLGGCLALSDLKASNNSITSLPEDLARCSKLTKVDVEGNKLKVLSGNLMASWTMLTEFNASKNLLSDIP DNFGSLSRLIRLDLHQNRISTIPPSIMGCCSLAEFYMGNNALSTLPAEIGALSRLGTLDLHSNQLKEIPAEACKLQLSMLDLSNNSLTGLPPELGKMTTL RKLLLNGNPLRTLRSSLVSGPTATLLNYLRSRLSEGEDSKATTPAKKDLISMTARLSVSSKELSLQGLGLSAVPSEVWESNEIVKVDLSRNSIQELPLEL SLCVSLQCLILSRNKISDWPCAILKSLPNLICLKLDNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKELYLRQVQLREIPSDILSLQQ LQILNLSQNSLHSIPEGLKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLMDKIPEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15410			Leucine-rich repeat (LRR) fami...		Potri.011G121700 [exp]	0	1
AT2G41830			Uncharacterized protein (.1)		Potri.016G055100 [exp]	5.47	0.8575
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	5.65	0.8716
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	7.34	0.8763
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	7.74	0.8734
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	9.64	0.8846
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	11.13	0.8262
AT5G26330			Cupredoxin superfamily protein...		Potri.008G151000 [exp]	14.31	0.8644
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.015G113200 [exp]	22.18	0.8623
					Potri.018G139200 [exp]	26.00	0.8470
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.007G121400 [exp]	26.32	0.8619

Compare expression of checked genes

Potri.011G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.