Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53750 355 / 5e-120 CBS domain-containing protein (.1) AT4G27460 352 / 3e-119 Cystathionine beta-synthase (CBS) family protein (.1) AT1G65320 121 / 2e-30 Cystathionine beta-synthase (CBS) family protein (.1) AT1G80090 46 / 4e-05 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G402900 [exp] 696 / 0 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.004G041000 [exp] 365 / 2e-124 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 362 / 3e-123 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.013G087100 [exp] 122 / 1e-30 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.019G052650 [exp] 100 / 3e-23 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018183 [exp] 372 / 9e-127 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10025651 [exp] 370 / 2e-126 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10029665 [exp] 322 / 2e-107 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10042702 [exp] 315 / 1e-104 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10037535 [exp] 129 / 3e-33 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1) Lus10011457 [exp] 124 / 1e-31 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G122000.1 pacid=42780247 polypeptide=Potri.011G122000.1.p locus=Potri.011G122000 ID=Potri.011G122000.1.v4.1 annot-version=v4.1 ATGGCAGTGAGTTTACTTGCACGTGAGATATCTGACCTCTGCTTAGGCAAGCCTGCTTTGAGGTCTCTCTCACTCACCACAACGATAACTGAAGTTCTAT TTGCTCTTAAAAACTCTGATGATAACTTCTTAAGTGTATGGAGTTGTGAGCACACAGCAAAAACTAATAAAGACTACAGAGGCAATTGTGAAGAGGATGG CTGTGATGTTGGTGAGTGTAAATGTGTGGGTAAAGTTTCCATGGTGGATGTAATATGCTATCTTTGCAAAGACGAGAACTTGTTGTCCCCTTCTGATGCT TTGAAAGCACCTGTTTCTGTTCTCTTGCCTGAGATTCCTGGAATGGTTGTTCACGTGGAACCAACTTCAAGCTTATTGGACGCAATTGATCTCATCCTCC AAGGAGCCAAGAATCTAGTTGTGCCAATAAAGACCAGATATAGCTCCAGTTCAAGAAGAAAACAGCACCAAAAACTCTCAATCACCAGCCCCACCATCCA CAATGGCCGGGAATTCTGTTGGCTAACACAGGAAGACATAATCAGATTCTTCCTCGGCTCCATTGGCCTCTTTGCTCCACTTCCAGCTCTCTCTATTGAC ACACTTGGCATTATAAGCACTGATTATCTTACTATCGATTACCACTCCCCTGCTATCTCAGAACTTGAAGCCATTTCTGGTTCTCTAGCAGACGAGAATT CCGTTGCAATCATTGACAGTGATGGCATCTTAATTGGGGAGCTCTCTCCATTCACTCTAGCCTGCTGTGATGAGAGTGTTGCAGCTGCAATCACTACCCT TTCATCCGGGGACTTGATGGCCTACATTGATTGTGGAGGACCCCCAGACGACCTTGTCAATTTGGTCATGACGAGGCTTAAAGGGAGAGGCCTAGAAGCA ATGCTGCAAGAATTCACCAATTCTAGTTGTTACTCAACTACTAGCTCATGTCATTCACGGTCTTCATCGTCATCATCTGATGAGGAGTCAGGGAGCAGCA CCCCATTTAGTGCGCTGCAGAGACCAGGAAAGTACAGCAGGTCCATGAGTTACTCAGCCAGGATGGTGAGGAGGGCAGAGGCAATAGTTTGTCATCCCAA GAGTTCACTTGTGGCTGTGATGATTCAAGCAATTGCTCATAGATTGAATTATGTGTGGGTCATAGAGGATGACTGTAGCTTGGTTGGGATTGTCAGATTT TGTGATGTGTTGAAAGTTTTCAGGGAAAGTATAGAAGATATGGCCTAA
AA sequence Show only first row Show all	>Potri.011G122000.1 pacid=42780247 polypeptide=Potri.011G122000.1.p locus=Potri.011G122000 ID=Potri.011G122000.1.v4.1 annot-version=v4.1 MAVSLLAREISDLCLGKPALRSLSLTTTITEVLFALKNSDDNFLSVWSCEHTAKTNKDYRGNCEEDGCDVGECKCVGKVSMVDVICYLCKDENLLSPSDA LKAPVSVLLPEIPGMVVHVEPTSSLLDAIDLILQGAKNLVVPIKTRYSSSSRRKQHQKLSITSPTIHNGREFCWLTQEDIIRFFLGSIGLFAPLPALSID TLGIISTDYLTIDYHSPAISELEAISGSLADENSVAIIDSDGILIGELSPFTLACCDESVAAAITTLSSGDLMAYIDCGGPPDDLVNLVMTRLKGRGLEA MLQEFTNSSCYSTTSSCHSRSSSSSSDEESGSSTPFSALQRPGKYSRSMSYSARMVRRAEAIVCHPKSSLVAVMIQAIAHRLNYVWVIEDDCSLVGIVRF CDVLKVFRESIEDMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53750			CBS domain-containing protein ...		Potri.011G122000 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.002G039000 [exp]	1.00	0.8588	ERF28
AT5G37780		ACAM-1, TCH1, C...	TOUCH 1, calmodulin 1 (.1.2.3)		Potri.012G041000 [exp]	14.83	0.7450	Pt-ACCAL.2
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Potri.006G054700 [exp]	26.72	0.7868
AT1G64700			unknown protein		Potri.011G153000 [exp]	48.78	0.7572
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.001G311700 [exp]	54.26	0.7081	MSJ1.1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.003G118200 [exp]	57.68	0.7626
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.004G047600 [exp]	96.47	0.7423
AT3G03660	HD	WOX11	WUSCHEL related homeobox 11 (....		Potri.013G066900 [exp]	97.10	0.7456
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413700 [exp]	125.03	0.7417
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	163.00	0.7098

Compare expression of checked genes

Potri.011G122000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.