Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15460 517 / 0 Ribosomal RNA processing Brix domain protein (.1) AT1G52930 508 / 0 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403100 [exp] 597 / 0 AT3G15460 514 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027900 [exp] 506 / 0 AT3G15460 512 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10002403 [exp] 496 / 2e-178 AT3G15460 519 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10019857 [exp] 425 / 1e-150 AT3G15460 444 / 4e-158 Ribosomal RNA processing Brix domain protein (.1) Lus10014058 [exp] 418 / 8e-148 AT3G15460 442 / 3e-157 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [poplar] [flax] IIaaRS-ABD PF04427 [poplar] [flax] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Potri.011G122200.1 pacid=42781891 polypeptide=Potri.011G122200.1.p locus=Potri.011G122200 ID=Potri.011G122200.1.v4.1 annot-version=v4.1 ATGGGAAAGAAGAGAAAGCATAGTGAGACACAGGTCATTGAACCTGCAAAGAAAGATGAAAGTGAAACAGAGAGACCTAAAAGGACGCTCTTGGGTTGGA AAGATAAACCTGAAGAGAAAGAGACTGAATCCCTACCTCCTCATCAGGGTGGTTTTAGAAATAAAGAGAAAGTCTTGGTTACTTGTTCGAGGCGTATTAA TTACAGGTATAGGCACTTGATGTTGAATCTGGTGTCACTTTTGCCACATTGTAAGAAGGATAGTAAGGTTGAGTCTACAAGTAGTAAAGGCGCAACGTTG AATGAGCTTGTTGAGTTGAAGAATTGTTCTTCTTCTTTGTTCTTTGAGTGCCGGAAACATAAAGATTTGTACCTGTGGATGGTCAAGTGCCCCAGTGGTC CGTCTGTGAAATTCTTAGTCAATGCTGTGCACACAATGGAAGAATTGAAGCTTACAGGAAATCATCTGAAAGGGTCTCGACCTCTCTTGACTTTCTCAGC TAACTTTGATAAAGATGCTCACTGGAAACTCCTGAAGGAGATGATCATTCAGATATTTGGAATCCCAAAGGATCACAGGAAATCTAAGCCTTTTTATGAC CATGTCTTTGTTTTCTCTATTGTTGATGACCATATATGGTTTCGGAATTACCAGATATCTGTTCCTCATAATGAAACAGATAAAATGGCTCGAGGAGGCC TGGATAAGATGACCCTTGTTGAGGTTGGTCCAAGATTTTGCCTGAACCCTATCAAGATTTTTGGTGGCAGCTTTGGAGGCCCAACATTGTATGAAAATCC GTTTTTTATATCACCTAACCAGATTCGAGCATTGGAGAAAAAGCAGAAGGCTGGGAAGTTTGCCAAGAAGGTCAAGGCCAAGACGAGGAGGAAGATGCAC GAGCTATCAAATCCATTGGAGCCTGATGAATTTGCAGACATGTGGAAGGAATGA
AA sequence Show only first row Show all	>Potri.011G122200.1 pacid=42781891 polypeptide=Potri.011G122200.1.p locus=Potri.011G122200 ID=Potri.011G122200.1.v4.1 annot-version=v4.1 MGKKRKHSETQVIEPAKKDESETERPKRTLLGWKDKPEEKETESLPPHQGGFRNKEKVLVTCSRRINYRYRHLMLNLVSLLPHCKKDSKVESTSSKGATL NELVELKNCSSSLFFECRKHKDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKEMIIQIFGIPKDHRKSKPFYD HVFVFSIVDDHIWFRNYQISVPHNETDKMARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFFISPNQIRALEKKQKAGKFAKKVKAKTRRKMH ELSNPLEPDEFADMWKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15460			Ribosomal RNA processing Brix ...		Potri.011G122200 [exp]	0	1
AT1G25260			Ribosomal protein L10 family p...		Potri.011G156300 [exp]	2.44	0.8707
AT5G27395			Mitochondrial inner membrane t...		Potri.013G026700 [exp]	5.47	0.8631
AT5G02050			Mitochondrial glycoprotein fam...		Potri.016G102200 [exp]	5.91	0.8577	SDH4.2
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	6.48	0.8551
AT1G18850			unknown protein		Potri.015G064300 [exp]	8.94	0.8671
AT1G14810			semialdehyde dehydrogenase fam...		Potri.008G135700 [exp]	10.24	0.8047
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	14.83	0.8358	Pt-CPN60.2
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.015G147500 [exp]	15.49	0.8438
AT4G12600			Ribosomal protein L7Ae/L30e/S1...		Potri.013G116800 [exp]	20.49	0.8489
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Potri.008G110100 [exp]	21.72	0.8598

Compare expression of checked genes

Potri.011G122200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.