Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15470 835 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 810 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 489 / 6e-159 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 476 / 1e-153 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 347 / 3e-107 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 338 / 3e-104 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 333 / 2e-101 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 328 / 2e-100 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48870 256 / 2e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 89 / 1e-18 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403400 [exp] 1155 / 0 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 559 / 0 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 442 / 2e-142 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G144400 [exp] 401 / 7e-127 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 394 / 2e-124 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 392 / 2e-123 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 365 / 2e-113 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 320 / 2e-97 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 317 / 4e-96 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027671 [exp] 680 / 0 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 673 / 0 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 530 / 9e-174 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 504 / 5e-163 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 383 / 3e-120 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 378 / 5e-118 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 338 / 5e-104 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039933 [exp] 315 / 2e-101 AT3G15470 197 / 1e-58 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027670 [exp] 312 / 1e-100 AT3G15470 196 / 2e-58 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020846 [exp] 312 / 5e-95 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.011G122500.1 pacid=42782065 polypeptide=Potri.011G122500.1.p locus=Potri.011G122500 ID=Potri.011G122500.1.v4.1 annot-version=v4.1 ATGAGCAGAAACGACACCACTACTGACAAAAACGACGGTGAAGAAGAACAAGTAGTAGTAGTAGAAGAAGAAGAAGAAGAACATTTTTACGAGTCATTGG ATCGCATTGCTTCCTCTTCTTGTTCTACTTCCAACTCCGACTCCGATCCCGACCAGACCCGTTCCAATTCCCCTCGTCTTAACAGCAAACTTCATGTCAG TAATTACGATGTCTGGATCTCTCAACCCGAATCCATCTCCGAACGCCGCCAACGCCTTCTTCACAACATGGGTCTCAGCTCCGACCCCTCTCTTTCCCGC TCCAAACCCGAAACTACCCACGGTGATTTTTACTTTAAACGCTCTGTCTCATCGGATCGTTTGATTGCAGAAAAACTGAGTGGCTCGGTTTCCAGTTGTT CTTCTGCTATCCACCGATCGAAATCAGACGGTGGTGGTGGTCGTTCTGTAGATCATGATAATGATTTTAATTCGTGTTGTTCTTCGTCTTCTGTTTATTG TTCGCCTTCTTCCATTCTTTTGCAAGATTCAATTAATGTAAATAGTGATGACAGTAATTATAATAGTAATACTAATAATAATATTAACAACAGCAAACTC AGCAATAATGGATTTGGTGTTGTTGGTTGTGGTAAAAAAAGCAAAAGCAAAAATGGGGCTTCTCCGAAAGATGGTAGTAGTAGTGGTAGTGTTAATGTTG TTGTTTCGCCGAATAAGCCGCCTTCTGGGAAACAACATTGTAGTAACTCCGCGAATTCTAATGAGAATTTTAATGGGAGCTTGTCAGTTGGGAGTTCTGT GGAGTTCGCGGAGGAGTTGGAATGTAGTGGGTCGGCGGATGCGGATGGGGCAGTGGCGGCCGAGGGAGAGGTGGAGGTTTGTACTATTAAGAATCTTGAT AACGGGAAAGAGTTTGTTGTTAATGAGATAAGAGAGGATGGGATGTGGAATAAGTTGAAGGAAGTTGGGACCGGGAGGCAATTGACAATGGAGGAGTTCG AAATGTCTGTTGGGCATTCGCCCATCGTGCAAGAATTGATGAGGAGGCAAAATGTGGAGGATGGGACGAGAGGAAATCTTGATTCCAATGCTAATGGAGG GATTGGAGGTGGGGTTACAAAGTTTAAAAAGAAGGGTAGTTGGTTTGGGAGTATAAGGAGTGTGGCGAATAGTGTGACAAGGCATAAGGAGAGGAGAAGT AGTGATGAGAGGGATACTGGATCGGAGAGGGGAGGGAGGAGGTCAAGTTCTGCTACGGATGATAGCCAGGATGTGTCATTTCATGGACCAGAGAGAGTGA GGGTGAGACAATATGGGAGGTCGTCTAAAGAGTTGAGTGCACTTTATAAGAGTCAGGAGATACAGGCTCATAATGGGTCTATTTGGAGTATCAAGTTCAG TTTGGATGGGAGGTATCTAGCAAGCGCAGGTGAGGATTGTGTAATTCACATTTGGCAGGTTAAGCAGTCAGAGAGGAAAGGAGAGTTGTTGATGGAGAAA CCAGATGATGGGGGCTTAAACTTGTTGTTAATTGCAAATGGATCTCCAGAACCTAATCTGCTGTCACCACTTGTGGATAGTCATCTGGAGAAGAAGAGGA GAGGGAGGTCATCTATAAGCAGAAAATCTCTGAGCTTGGACCACATCTTCGTGCCAGAGACAGTGTTTTCTCTCACGGATAAACCCATTTGTTCATTCCA AGGACATCTTGATGACGTGCTTGACCTTTCATGGTCCAAGTCTCAGCACCTGCTTTCTTCTTCTATGGACAAAACAGTGCGACTGTGGCACATGTCTAGC AAAACTTGTTTGAAAGTCTTTTCTCACAGTGATTATGTAACATGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGGTCATTAGATGCAA AAGTTCGCATTTGGAGCATTCCTGATCGTCAAGTTGTTGATTGGAATGATCTGCATGAGATGGTCACTGCTGCTTGCTATACTCCAGATGGTCAGGGTGC ACTTGTTGGTTCACACAAGGGAAGCTGTCGTTTATACAACACATCTGAGAATAAGTTGCAACAAAAATGTCAAATTAATCTGCAGAATAAGAAGAAAGCT CATCTAAAAAAAATCACTGGATTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTGCTAATCACATCAGCAGATTCTCGAATTCGAGTCATTGATGGCTTTG ATCTGGTTCACAAGTTCAAAGGGTTTCGTAACACCAACAGCCAAATCTCAGCATCCCTCACAACAAATGGAAAATACGTGGTCTCTGCTAGTGAGGATTC ATATGTTTATGTGTGGAAGCATGAAGCTGATTCCCGACTTAGCAGAAGCAAAGGTGTTACTATCACACGCTCATATGAGCATTTCCTTTGTCAAGATGTA TCAGTGGCCATCCCATGGCCTGGCATGGCTGACACTTGGGGACTACAAGATACTTTATCAGGAGAACAGAATGGCCTTGATAACCATCTTGATGAAGTTT CCATTGTCAATCACCCTCCTACTCCTGTTGAGGAAGCAAGTAATGAGGGTTCACAATCTTTAACTGGGTGCACCAATAGTCCCATGAATGGAATTATTTC TAGTGCAACCAATGGTTACTTTTTTGACAGAATATCAGCAACATGGCCGGAGGAAAAGCTTGATTTAGCAACAAGAACAAGGAGTCATCATGCCAGTGTG GATATCTCCAATGGGTTAAGCCAAAATGTGTCTGCCTATGGTATGGTGATTGTAACTGCCGGCCTTAGAGGGGAAATCAGAACTTTCCAAAATTTCGGAT TGCCAGTTCGAATTTAA
AA sequence Show only first row Show all	>Potri.011G122500.1 pacid=42782065 polypeptide=Potri.011G122500.1.p locus=Potri.011G122500 ID=Potri.011G122500.1.v4.1 annot-version=v4.1 MSRNDTTTDKNDGEEEQVVVVEEEEEEHFYESLDRIASSSCSTSNSDSDPDQTRSNSPRLNSKLHVSNYDVWISQPESISERRQRLLHNMGLSSDPSLSR SKPETTHGDFYFKRSVSSDRLIAEKLSGSVSSCSSAIHRSKSDGGGGRSVDHDNDFNSCCSSSSVYCSPSSILLQDSINVNSDDSNYNSNTNNNINNSKL SNNGFGVVGCGKKSKSKNGASPKDGSSSGSVNVVVSPNKPPSGKQHCSNSANSNENFNGSLSVGSSVEFAEELECSGSADADGAVAAEGEVEVCTIKNLD NGKEFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMSVGHSPIVQELMRRQNVEDGTRGNLDSNANGGIGGGVTKFKKKGSWFGSIRSVANSVTRHKERRS SDERDTGSERGGRRSSSATDDSQDVSFHGPERVRVRQYGRSSKELSALYKSQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHIWQVKQSERKGELLMEK PDDGGLNLLLIANGSPEPNLLSPLVDSHLEKKRRGRSSISRKSLSLDHIFVPETVFSLTDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHMSS KTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSHKGSCRLYNTSENKLQQKCQINLQNKKKA HLKKITGFQFAPGSSSEVLITSADSRIRVIDGFDLVHKFKGFRNTNSQISASLTTNGKYVVSASEDSYVYVWKHEADSRLSRSKGVTITRSYEHFLCQDV SVAIPWPGMADTWGLQDTLSGEQNGLDNHLDEVSIVNHPPTPVEEASNEGSQSLTGCTNSPMNGIISSATNGYFFDRISATWPEEKLDLATRTRSHHASV DISNGLSQNVSAYGMVIVTAGLRGEIRTFQNFGLPVRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	0	1
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	1.00	0.8080	ALA3.3
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	2.00	0.7785
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	2.82	0.8020
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	3.00	0.7485
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	6.00	0.7677
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	6.70	0.7801
AT5G22760			PHD finger family protein (.1)		Potri.004G189600 [exp]	7.21	0.7267
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Potri.015G043200 [exp]	7.48	0.7578
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Potri.005G047600 [exp]	9.38	0.7421	Pt-EDR1.1
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	10.48	0.7016

Compare expression of checked genes

Potri.011G122500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.