Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) AT3G15480 206 / 3e-68 Protein of unknown function (DUF1218) (.1) AT1G61065 200 / 6e-66 Protein of unknown function (DUF1218) (.1) AT1G52910 199 / 9e-66 Protein of unknown function (DUF1218) (.1) AT1G13380 141 / 1e-42 Protein of unknown function (DUF1218) (.1) AT1G68220 119 / 8e-34 Protein of unknown function (DUF1218) (.1) AT5G17210 60 / 4e-11 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403600 [exp] 313 / 8e-111 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 162 / 3e-51 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 139 / 5e-42 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 137 / 5e-41 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 135 / 3e-40 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 134 / 1e-39 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 110 / 1e-30 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 54 / 7e-09 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032662 [exp] 253 / 1e-86 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 253 / 1e-86 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 179 / 1e-57 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 140 / 2e-42 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 139 / 7e-42 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10043484 [exp] 134 / 1e-39 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10011208 [exp] 129 / 2e-38 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 132 / 9e-37 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10032663 [exp] 94 / 2e-24 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [poplar] [flax] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Potri.011G122700.2 pacid=42781476 polypeptide=Potri.011G122700.2.p locus=Potri.011G122700 ID=Potri.011G122700.2.v4.1 annot-version=v4.1 ATGGCTTCAAAACTGTTGTTGATTATAGTCTCTGTCTTTGATATCATAGCATTTGGTTTGGCTGTTGCGGCTGAGCAGAGAAGAAGCACTGCCACTGTCC AACCAGATACTGAAAAAGATTACAGTTACTGCATCTATGATTCAGACATTGCAACTGGCTTTGGTGTTGGCGCTTTTTTGTTCCTCATGGCTAGCCAAGT CCTTATTATGTTTGCCAGTAAATGCTTCTGCTGTGGCAAGCCTTTGAGTCCTGGAGGTTCTAGGGCTTGGGCAGTTATCCTGTATATAACCTGCTGGGTG TTTTTCTTCATTGCTGAGATATGCTTGCTTGCGGGTTCAGTAAGGAATGCCTACCACACCAGGTACAAGAATTTTTTCGGTGAAACCCTGGATTGCCCAT CATTGAGGAAGGGAGTTTTTGGGGCAGGAGCTGCTTTTACTTTGTTCACAGCCATAGTGTCCGAGCTCTACTATATTTGCTATTCCAAGGCCAGTGACAG CTTCCAGCCATACGGTGGAGATGTTGGTGTGGGTATGGGGACCTACAAGTGA
AA sequence Show only first row Show all	>Potri.011G122700.2 pacid=42781476 polypeptide=Potri.011G122700.2.p locus=Potri.011G122700 ID=Potri.011G122700.2.v4.1 annot-version=v4.1 MASKLLLIIVSVFDIIAFGLAVAAEQRRSTATVQPDTEKDYSYCIYDSDIATGFGVGAFLFLMASQVLIMFASKCFCCGKPLSPGGSRAWAVILYITCWV FFFIAEICLLAGSVRNAYHTRYKNFFGETLDCPSLRKGVFGAGAAFTLFTAIVSELYYICYSKASDSFQPYGGDVGVGMGTYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	0	1
AT2G41610			unknown protein		Potri.014G108300 [exp]	1.00	0.9834
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	1.41	0.9646
AT5G54240			Protein of unknown function (D...		Potri.011G126300 [exp]	2.82	0.9575
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	3.16	0.9554
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.002G111900 [exp]	3.46	0.9582
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	4.24	0.9548
AT3G59110			Protein kinase superfamily pro...		Potri.002G059000 [exp]	5.19	0.9450
AT1G76070			unknown protein		Potri.002G016500 [exp]	5.65	0.9375
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.013G067300 [exp]	5.65	0.9459
AT5G55970			RING/U-box superfamily protein...		Potri.001G371200 [exp]	5.91	0.9488

Compare expression of checked genes

Potri.011G122700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.