Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIP7.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27430 649 / 0 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 325 / 4e-96 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT5G43310 246 / 9e-67 COP1-interacting protein-related (.1.2.3.4) AT3G14172 154 / 9e-38 unknown protein AT1G17360 138 / 9e-33 unknown protein AT1G72410 120 / 3e-27 COP1-interacting protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403700 [exp] 1848 / 0 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.004G038300 [exp] 599 / 0 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.011G046900 [exp] 595 / 0 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.008G168300 [exp] 280 / 2e-77 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.010G070200 [exp] 258 / 3e-70 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.001G164900 [exp] 161 / 7e-40 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 157 / 1e-38 AT3G14172 544 / 3e-170 unknown protein Potri.019G064000 [exp] 86 / 2e-16 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 81 / 4e-15 AT3G14172 122 / 7e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043092 [exp] 454 / 2e-141 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10032660 [exp] 455 / 2e-140 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10011217 [exp] 368 / 1e-111 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10018471 [exp] 365 / 2e-110 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10032661 [exp] 290 / 3e-87 AT1G61100 127 / 3e-31 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10021172 [exp] 214 / 2e-56 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10011809 [exp] 200 / 7e-52 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10013178 [exp] 158 / 1e-38 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 155 / 4e-38 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10000225 [exp] 145 / 1e-37 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G122900.1 pacid=42781820 polypeptide=Potri.011G122900.1.p locus=Potri.011G122900 ID=Potri.011G122900.1.v4.1 annot-version=v4.1 ATGGATTCGAGAACTCTTCTTGATCATGCTCTCTTTCAACTCACACCCACTAGAACAAGATGTGATCTGGTGATTTATGCTGGTGGTGTGAATGAAAAAC TGGCATCTGGGCTTTTAGAACCTTTCCTTCAACACTTAAAAACTGCTAAAGATCAGATATCGAAAGGAGGCTACTCCATTTCTCTTCGTCCTTTGTCTCC TAATGCCTTCTGGTTCACTAAAGCCACTCTGCAAAGATTTGTGTGGTTTGTTAGCTCACCAGAAGTTCTTGAGAGATTTGTGACAATAGAGACTGAACTA GAGCAGATTGAGTGTTCAGTTCAATCAAATGAACTATTCAATGCAGATGCAGAAGGTGCTGCTGGGAATTACCAAAAGTCATCTGCCTCATCTAAGTCAA GAGAAGATCACAGTGGAGGCAGTAATGGTGTCCAGGAAGAAAACTCCAAGGTTCGTCTTCAACGTGCTTTGGAATCTAGAAAGGCTGTTCTCCGCAAAGA GCAAGCAATGGCATATGCTCGTGCCTTAGTCACTGGATTTGAACCAGACTGTATAAATGATCTTATCTTCTTTGCCGATGCTTTTGGAGCTTCACGTTTA AGGGAAGCATGCATAAATTTCATGGAATTATGCAAGAAGAAGAATCAAGATCGGCTTTGGATGGATGAACTAGCAGCAATGCAGGCATCTCAGTTGGAAT TGCCTTATCTTAAGACTTCTGGCATTGTTCTGGCTGGCGAGGAAAATTACCCTGGTCAAATTGGTGGTCTCTCTGGTGGGAAGCACAGTGGTTCAATTGA TGCATCTGACTCGGCTACAAGTCTTGGAAGTTTAGACCTAAACCAAGATAGTGGTTTGCCAACATCAGCTCAGATGCAATCAACTGATGGGAAAGCTCAT ATGCCAATGCCATGGCCAAATCATCATCCCCAGTTCAAGCACAACTTTCAAGGTCCTGTATTTCAACAAATGTCCCCATATCAAGGCTACCTTTTTCCTG GTATGCAGGTCGGCTCTCCATATTTTCCAGGGAACATGCAATGGCCTCCAAATGTTGATGATTCTAGCTATGGTCAAGACTGGGAACCTGACAACCGTGA AAAGCATAAATCATCCTCCAGGAACAAGAAGTCTTCTCGTCAAAAAGAACTGCAAGCTTCTAATCAAGATGAATCCACTGAGCCTAGTGATTCCAGCTCA GAGACTGAATCGGATGAAAATCTGCGAAGTGGCAAAAAGCAGGCATCGGTGGATAAGATGCACAGGAAAAGGCATGGGAAGAAGTCATCACGAAAGGTTG TCATTCGCAACATCAATTACATTACTTCAACAAAAGATGGAGAAAAGGGCAGCATGTCTGGCAGCACATCTGATGAGGGTGGATTTATTGATGGAGAAGC TCTCAAGCAGCAAGTACAGGAAGCTGTTGGTTCATTAGAGAGACGGCATAAATCAACCTCTCGACATCACAAGAAATCACAGCGCAGCACTATAGATGGT TCAAATGGTGCTACTGATCAGGAAGGCAAGAACATAACTGAAAATAATCGTGAAGGAGAAAAAGTAGAGCACTGGGGTGCCTTTCAGAGCCTTCTCATGC AGGACAGATATTTGGACTCTTTTGGAATTGAACCTCATCCTCCACAGGTTCACAGAGATGACTTTACAGCTAAGGGCTATGAGGAGGGAAGGTCATTGGA ATTTAACGTCGAATCTGAGGGAATAAGAAAGCAACGAGCATTAGCAAATGATTCGTTCATCGCAGCAAAGAGGGGACCTGGTAATGAAGGTGAGTCTCGC GTTGAAAACTTTGAAGCCAGTGCAAATGGCCACCCAGTGATGAATAAGAGGGATAGCACATATGAGGAGTTGTTGTTTTCTCAAAGAGCTGGAGAATCAG GGAACTTACCCCGACCTACCGTTGCTGATTATTCCACTGAATCTCCATTAATCAAAAGTCAAAAAGAAGGGGATTGGTTTATTAGCAGCCAACTGGACAG GGATGATCACAGGGACCATAAACCATTTAGTGATGATTATGATTCATCATTAACTGGTGAGCATTTCCAATCTGAGAAAAATAAGAAGGAAGTTCTAGCG GATGACTCGTTCATGATCCAAGCTCGACCGTTAGTTGATGATCAGTCTGATTCACTATTACGGACAGACATAAGCATTGCTCCAGATGTAATTGAAGCTA CTCTATATGAGAATGAAATGAGAGAGATATCTCATGATAAATCTGAAGCATTTGATGTCTATGAACCAGATGACCTTTACATGGTGCTTGGGCGGGATTC AGCTGCTGAGCATGCTCTACCATCTTGGACTCCAGAGATGGATTATGAAACAAATACTGCTCAAGATAAGCTTCCTTCTAACAGTATGGGAACCAATGGC AAAACAAGTGTAAATTCTGGCGGAAAAGTTGCTGGTAAAGAAGTCAGGTCAAAAGTTCCTAACGGATCTCTTGGTAGAGGCAAATCTGATATCATGTCAA GGACAAAGAAACCAACTTCTGCAAGCAGAACCACACTTCCGAAGAGCAAATCCGAGAAGGAAGAAGTAAACAGGAAGAGAATGGAGGAGTTATTGATTCA ACGTCAGAAGAGAATAGCGGAAAGGAATGCTGCTGGCAGTATTCCGGCGACATCTAAGAGAATCCCTGCAGGGAAAGTATCTACTTCAACTTCCATAAAG AATGAGAAGCCTAAAAGCAAATCTCCAAGCCAAGAGACAAAGAAAGCACTCTTTAGAAGTTCCACCATTGATCGCCTTGCTACTGCTCGGGCAACCACAA AGTCGCCATCAACTGAATTGAAAGCTGCCCAACCCAAAAAGGCAAACTTGAAGGCTAATGGTTTAGCTCAGAAGACTGCTGGTGCTGATAATAAGAAACC TCCGAACACAGTCAAATCTGATGTCAATAGAAAGAAGGTTGGGACAATAGCCAGAGCAGAGAAGCCTGCGGATTTATTACCTATGCAAGCAGCACAGTCT GCAGATGAAATTGATGGTTTCAAAGATATAAAGGAGTTACACAGTGTTGCTTCTACAGAGAATAATGCAGGAAATGTGATTTCAGCTGGTAACTTGGATG ATAAAGGCTGCAATGGTGATTCACTCCACATGGACTCATCTGCCCCACATAATCACTCTAGAGCAGGTGACGAGGGGTTCTCTAAAGTAGCTCCAGTAGT TTGTGAAGACATAGAAACTTCTGATAATCATGGTGAGTACATATCTGAAACAATAATACATCCTGTGCTAGAGTCACCAAACAGGGCTCTGAACCCATGC GCTGTGGATATCAGAGAAAATGGTGCTTTCAGTGAAATTTTGGAGTCACCCGAAAAAACTGAAATAGAAATATCGACCCCACCACCTGATGAAATGAACC CAGAACCAATCCACTCCAGGAAGAAATGGAACAGTGAAGATCACTCTCCTAAAGTAGCAAAAGGGTTTAGAAAGCTTCTTTTGTTTGGAAGGAAAGGTCG AGCCTCTGCTGCAAACTGA
AA sequence Show only first row Show all	>Potri.011G122900.1 pacid=42781820 polypeptide=Potri.011G122900.1.p locus=Potri.011G122900 ID=Potri.011G122900.1.v4.1 annot-version=v4.1 MDSRTLLDHALFQLTPTRTRCDLVIYAGGVNEKLASGLLEPFLQHLKTAKDQISKGGYSISLRPLSPNAFWFTKATLQRFVWFVSSPEVLERFVTIETEL EQIECSVQSNELFNADAEGAAGNYQKSSASSKSREDHSGGSNGVQEENSKVRLQRALESRKAVLRKEQAMAYARALVTGFEPDCINDLIFFADAFGASRL REACINFMELCKKKNQDRLWMDELAAMQASQLELPYLKTSGIVLAGEENYPGQIGGLSGGKHSGSIDASDSATSLGSLDLNQDSGLPTSAQMQSTDGKAH MPMPWPNHHPQFKHNFQGPVFQQMSPYQGYLFPGMQVGSPYFPGNMQWPPNVDDSSYGQDWEPDNREKHKSSSRNKKSSRQKELQASNQDESTEPSDSSS ETESDENLRSGKKQASVDKMHRKRHGKKSSRKVVIRNINYITSTKDGEKGSMSGSTSDEGGFIDGEALKQQVQEAVGSLERRHKSTSRHHKKSQRSTIDG SNGATDQEGKNITENNREGEKVEHWGAFQSLLMQDRYLDSFGIEPHPPQVHRDDFTAKGYEEGRSLEFNVESEGIRKQRALANDSFIAAKRGPGNEGESR VENFEASANGHPVMNKRDSTYEELLFSQRAGESGNLPRPTVADYSTESPLIKSQKEGDWFISSQLDRDDHRDHKPFSDDYDSSLTGEHFQSEKNKKEVLA DDSFMIQARPLVDDQSDSLLRTDISIAPDVIEATLYENEMREISHDKSEAFDVYEPDDLYMVLGRDSAAEHALPSWTPEMDYETNTAQDKLPSNSMGTNG KTSVNSGGKVAGKEVRSKVPNGSLGRGKSDIMSRTKKPTSASRTTLPKSKSEKEEVNRKRMEELLIQRQKRIAERNAAGSIPATSKRIPAGKVSTSTSIK NEKPKSKSPSQETKKALFRSSTIDRLATARATTKSPSTELKAAQPKKANLKANGLAQKTAGADNKKPPNTVKSDVNRKKVGTIARAEKPADLLPMQAAQS ADEIDGFKDIKELHSVASTENNAGNVISAGNLDDKGCNGDSLHMDSSAPHNHSRAGDEGFSKVAPVVCEDIETSDNHGEYISETIIHPVLESPNRALNPC AVDIRENGAFSEILESPEKTEIEISTPPPDEMNPEPIHSRKKWNSEDHSPKVAKGFRKLLLFGRKGRASAAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	0	1	Pt-CIP7.1
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.001G403700 [exp]	1.00	0.9476	Pt-CIP7.2
AT5G42710			unknown protein		Potri.014G185300 [exp]	1.73	0.9270
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	2.00	0.9317
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	3.46	0.9228
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	3.74	0.8901
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	4.24	0.8841
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	7.00	0.9055
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	7.54	0.8833
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	8.94	0.8869
AT3G01810			unknown protein		Potri.001G333200 [exp]	9.74	0.9140

Compare expression of checked genes

Potri.011G122900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.