Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20875 88 / 2e-23 EPF1 epidermal patterning factor 1 (.1) AT1G71866 69 / 1e-15 unknown protein AT1G34245 59 / 4e-12 EPF2 EPIDERMAL PATTERNING FACTOR 2, Putative membrane lipoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136100 [exp] 99 / 7e-28 AT2G20875 118 / 2e-35 epidermal patterning factor 1 (.1) Potri.019G102800 [exp] 91 / 8e-25 AT2G20875 118 / 1e-35 epidermal patterning factor 1 (.1) Potri.013G116600 [exp] 69 / 6e-16 AT1G34245 102 / 2e-29 EPIDERMAL PATTERNING FACTOR 2, Putative membrane lipoprotein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018576 [exp] 87 / 6e-23 AT2G20875 120 / 2e-36 epidermal patterning factor 1 (.1) Lus10039807 [exp] 47 / 6e-08 ND 53 / 6e-11
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G123000.2 pacid=42782438 polypeptide=Potri.011G123000.2.p locus=Potri.011G123000 ID=Potri.011G123000.2.v4.1 annot-version=v4.1 ATGAAACATCCACTCTTCTACGTTTTGGCAATATTTGTTGCTGCCGCTCTCATCATTCCACTCATGACCATGTCTGCTGTCAGAATTAGTCGTCATAGTA ACCGTGAACGATATACTACATGGCCAAGAAAAAGAAACAGCACCATGGGGAGGCTGACACTAACTTCGAAGGGAGTAGTGAGGGAGCGAATGAAGCAAAA TGGAGCACACCCACTTCAAATTGCCGGCTCTAGATTACCAGATTGCTCTCATGCTTGTGGGTCATGTACACCCTGTGTGTTAAAAATTGTTAGCTCACTA TGTTCCTCCCTTGCTCAGTCCGAGGCATGCCCTATATCATATAAGTGCATGTGTAAGAACAAATATTATCCAGTTCCATAA
AA sequence Show only first row Show all	>Potri.011G123000.2 pacid=42782438 polypeptide=Potri.011G123000.2.p locus=Potri.011G123000 ID=Potri.011G123000.2.v4.1 annot-version=v4.1 MKHPLFYVLAIFVAAALIIPLMTMSAVRISRHSNRERYTTWPRKRNSTMGRLTLTSKGVVRERMKQNGAHPLQIAGSRLPDCSHACGSCTPCVLKIVSSL CSSLAQSEACPISYKCMCKNKYYPVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20875		EPF1	epidermal patterning factor 1 ...		Potri.011G123000 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.007G139501 [exp]	10.48	0.9072
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128200 [exp]	22.13	0.8941
AT4G25830			Uncharacterised protein family...		Potri.018G094500 [exp]	24.24	0.8921
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	26.55	0.8858
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Potri.006G177500 [exp]	50.29	0.8754
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	133.08	0.8292
AT2G36430			Plant protein of unknown funct...		Potri.003G181600 [exp]	162.77	0.8414
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Potri.007G023600 [exp]	185.43	0.7951
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	186.49	0.8258
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	195.47	0.8328

Compare expression of checked genes

Potri.011G123000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.