Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27420 737 / 0 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G31770 645 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 602 / 0 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT5G06530 522 / 8e-178 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 508 / 1e-171 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G71960 483 / 8e-164 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G13220 440 / 2e-146 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 252 / 3e-74 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G37360 233 / 3e-67 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55100 224 / 1e-64 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404000 [exp] 1025 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.004G236500 [exp] 649 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 627 / 0 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.003G046800 [exp] 612 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.016G065900 [exp] 537 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.013G111900 [exp] 528 / 0 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 525 / 4e-180 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.006G199500 [exp] 498 / 3e-168 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 454 / 3e-152 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025597 [exp] 728 / 0 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 725 / 0 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10025596 [exp] 705 / 0 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10034775 [exp] 650 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 650 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 635 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 619 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 578 / 0 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10015994 [exp] 531 / 0 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10028704 [exp] 499 / 2e-169 AT1G71960 818 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.011G123200.1 pacid=42781245 polypeptide=Potri.011G123200.1.p locus=Potri.011G123200 ID=Potri.011G123200.1.v4.1 annot-version=v4.1 ATGGAACGAGAGATGGCTGACATAGAGGCGCTAAATGAGGAAGAACCAGGAGTCTCAACCATCTTCAAGAAAGCAACTAGGGCTGTTTCTTTGAGGTTTG AGGATGTAGTCTACAAGGTCAGGCTTACGAAAGCAGGTTTTTGTGGAAAGATTGTCAAAGCAGAAGAAAAGGTTATCTTAAAGGGAATCACAGGCAAGGT TCTACCTGGTGAAATGCTAGCCATGTTCGGTCCATCAGGCAGTGGTAAAACAACTCTCTTAACCGCATTAGGAGGCAAACTTGGAGGACTACTTGATGGG AACATAAGCTATAACGGCAAGAACTTCTCCAACTCAATGAAAAGGAACATGGGATTTGTTACTCAAGATGATGTTCTTTACCCTCATTTAACAGTGACAG AAACTTTGGTTTTCACTGCCCTTCTTAGGTTAGAAAATACTTTTAGTAAAGAAGAAAAGATCATGCATGCAGAATCTGTGATTACTCAACTAGGTTTAAC CAAGTGCAAGAATAGCATCATTGGGGGCCCATTTATGAGAGGAGTTTCTGGGGGTGAGAGAAAGAGGGTTAGTATAGGACAAGAGATGCTCATAAACCCT AGCCTTCTTTTCTTGGATGAGCCAACATCAGGTCTTGATTCTACAACAGCTCAAAGAATTGTGTCCAATTTGTGGGAGCTGGCAAAAGGAGGAAGAACAA TTGTAATGACCATCCATCAACCTTCAAGTAGGTTATTTTACATGTTTGACAAGGTTTTGCTATTATCAGAAGGCAGCCCACTGTACTTTGGGGAGGGATC ACAAGTTATGGATTACTTTTCCAGCAATGGATATGCTCCAGCAGTTCCCATGAATCCTGCTGATTTCCTTTTGGACCTTGCAAATGGTGTATCATCAAAT AGTGAGGTTCCTGGATCAGTCAAGCAGAATCTAGTGTCAGCCTACAAGAGCAATCTTGCAAGCAAGTTGAAGTCAGAGGTTCAAGACATTGATGATCAGC CTCAAGATGGATTAAATGATCAGAAAGTTGCACGGTGGGCAACAACTTGGTGGCAACAGTTTTCTGTATTGTTGAGAAGAGGAGTGAAAGAAAGGAAGCA TGACTCCTTCTCTGGCCTCAAGATTGCTCAGGTCTTGGTGGTTGCTTTCCTTTCAGGGCTTCTGTGGTGGCAATCTGATGTATCCCATCTACAAGATCAG ATGGGGCTCCTCTTCTTTTACTCAGGATTCTGGGGCTTCTTCCCTTTATTCCAAGCGATTTTCACCTTCCCTCAAGAACGTAGTATGCTCGAAAAGGAAC GATCTTCCGGCATGTATCGACTATCATCATACTTTATGTCAAGGATTGTCAGTGACCTCCCAATGGAGCTAGTCCTTCCTACCATTTTTGTAAGTATAAC CTACTGGATGGCAGGGCTTAAAGGCACACCAGGAAACTTCTTGCATACCTTGTTCGTTCTCTTGTATTCTGTGTTAGTATCAGGAGGTCTAGGACTAGCA CTTGGTGCTCTGGTGTTGAACCAAAAATCTGCTACCATAATGGGATCGGTGATCATGCTGTCGTTCCTGCTTGCTGGCGGATACTATGTTACACACGTCC CTGCCTTCATTAGCTGGGTGAAGTACATCTCCATTAGCCAATACACATACAAGCTGTTGCTGGGGTCTCAATTCAAGCCCACAGACACTTATCCATGTGG TGGTGCTGGCGGAGTTTGTTTAGTTGGAGATTACCCTGCAATCAAACAAGTGGGGCTTGATGGCCAAGTTCTTGGTGCGGCTGTATTAGGGATTATGCTT GTGGTTTATCGCCTGATCGCTTTCTTTGCTCTCATGAGGATTGGAGTAACTAAAAAGTAG
AA sequence Show only first row Show all	>Potri.011G123200.1 pacid=42781245 polypeptide=Potri.011G123200.1.p locus=Potri.011G123200 ID=Potri.011G123200.1.v4.1 annot-version=v4.1 MEREMADIEALNEEEPGVSTIFKKATRAVSLRFEDVVYKVRLTKAGFCGKIVKAEEKVILKGITGKVLPGEMLAMFGPSGSGKTTLLTALGGKLGGLLDG NISYNGKNFSNSMKRNMGFVTQDDVLYPHLTVTETLVFTALLRLENTFSKEEKIMHAESVITQLGLTKCKNSIIGGPFMRGVSGGERKRVSIGQEMLINP SLLFLDEPTSGLDSTTAQRIVSNLWELAKGGRTIVMTIHQPSSRLFYMFDKVLLLSEGSPLYFGEGSQVMDYFSSNGYAPAVPMNPADFLLDLANGVSSN SEVPGSVKQNLVSAYKSNLASKLKSEVQDIDDQPQDGLNDQKVARWATTWWQQFSVLLRRGVKERKHDSFSGLKIAQVLVVAFLSGLLWWQSDVSHLQDQ MGLLFFYSGFWGFFPLFQAIFTFPQERSMLEKERSSGMYRLSSYFMSRIVSDLPMELVLPTIFVSITYWMAGLKGTPGNFLHTLFVLLYSVLVSGGLGLA LGALVLNQKSATIMGSVIMLSFLLAGGYYVTHVPAFISWVKYISISQYTYKLLLGSQFKPTDTYPCGGAGGVCLVGDYPAIKQVGLDGQVLGAAVLGIML VVYRLIAFFALMRIGVTKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Potri.011G123200 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	24.45	0.7969
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Potri.007G087500 [exp]	114.01	0.6962
AT5G39840			ATP-dependent RNA helicase, mi...		Potri.017G081900 [exp]	230.04	0.7811
					Potri.005G243501 [exp]	232.24	0.7679
AT1G17030			unknown protein		Potri.001G382000 [exp]	232.87	0.7679
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.017G027600 [exp]	237.09	0.6485
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Potri.003G050500 [exp]	239.59	0.7654
					Potri.010G239800 [exp]	247.94	0.7444
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.005G037201 [exp]	258.03	0.7157
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.007G086100 [exp]	258.98	0.7101

Compare expression of checked genes

Potri.011G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.