Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54440 1979 / 0 CLUB, AtTRS130 CLUB (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021680 [exp] 1293 / 0 AT5G54440 1212 / 0.0 CLUB (.1) Lus10021681 [exp] 647 / 0 AT5G54440 566 / 0.0 CLUB (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF11817 [poplar] [flax] Foie-gras_1 Foie gras liver health family 1 CL0212 [poplar] [flax] SNARE PF12584 [poplar] [flax] TRAPPC10 Trafficking protein particle complex subunit 10, TRAPPC10
Representative CDS sequence Show only first row Show all	>Potri.011G123900.1 pacid=42780334 polypeptide=Potri.011G123900.1.p locus=Potri.011G123900 ID=Potri.011G123900.1.v4.1 annot-version=v4.1 ATGGCAAACTACCTCGCTCAATTTCAAACTATCAAAAATAGCTGCGATCACATCGTCATTGCAGTTGAAGATGTGAGTGATTTATGGCCGAACATAAAAT CAGGATTCGATGAGAGAGTTCCAATTAAAAGAGCTAGTTTAAATAACAAGACTCGAAATCCAGTTCTCGTAGAGAATTTTCCTTGCGAATTTATATTAAC TACTGATTCAAGACTCCGCAGCCGGTTTCCTCAAGAACAGTCTTTGTTTTGGTTTCGCGAACCGTACGCTACTATTGTTCTAGTCACTTGTGAGGATCTT GATGAGTTTAAAACGATACTTAAGCCGCGGTTGAAGTTAATTGTGCAAAATGACGAGAAGGAATGGTTTATTGTGTTTGTGTCGAGAGCGCATCCGAGTA ATGATAATGCTGTTAAAATGGCGAAAAAGGTTTATGCTAAGCTTGAAGTTGATTTCAGCTCGAAAAAAAGGGAGAGGTGCTGCAAATATGATATTCATGG CCCTGAAGCAATTTTTTGGGATGATTTAGAATCGAAAATTATGGAGTGTGTCAGAAACACACTGGATAGGCGTGTACAGTTTTATGAGGATGAGATACGT AAGCTCACTGAACAGCGGTTCATGCCAGTCTGGAATTTCTGTAATTTCTTTATATTGAAGGAAAGCTTGGCTTTTATGTTTGAGATGGCTCATCTTTATG AAGATGCTCTACGTGAATATGATGAATTGGAACTCTGTTATTTGGAAACAGTTAATATGCCTGGAAAACAGAGAGAATTTGGAGGAGTAGACCATGGTGA TGATTGGGCAGCACTGCTTAATCCTGAAAATAAGCCATTGACGCAGATTGTTCAAGATGATTCATTTAGAGAATTTGAATTTAGGCAGTATCTCTTTGCT TACCAATCAAAGCTTTTATTCAAGCTGAATCGTCCCTTTGAGGTTGCATCAAGGGGTCATTCATTTATAATTGGCTTCTCAAAGGCCCTCACATTGCATG AGAATATGCTACCTTTTTGTATGCGAGAAGTTTGGGTAATAACTGCTTGCTTGGCTATAATCAATGCTACTGCTCCTAATTACGATGGACTTGTGGCACC TGACATAGAAAAGGAGTTCTACCGCCTCAAGGGTGATCTTTATTCTTTATGTCGAGTTAAGTTCATGAGGCTGGCCTATTTGATCGGATATGGAGCAGAT ATAGAAAGAAGTCCTGTCAACAGTGCCTTACTCAGCATGCTACCTTGGCCCAAGCCTCTGGTTTGGCCATCGGTTCCACCTGATGCTTCCCCTGAGGTTC TTGAGAAGGAAAAGGTGATCCTTCAAGCTACTCCTAAAATCAAACACTTTGGCATCCAGAGGAAGCCACTGCCTCTTGAACCTTCTGTACTTCTGCGAGA GGCTAATCGGCGAAGGGCTTCCCTTTCTGCTGGGAATGTGTTTGAGATGTTTGATGGCCGCCCAACCTTGATTGATGGATCAGCTTCAGATGCTTCATCA AGGACCCCCCTATTAAAGAAAATGAATGCGATTTCTATGTCGCGGACTAATTCTTCACCCGGAACTTTTGATGGTTCAGTAGATCGACCTATGAGACTTG CAGAGATTTATGTTGCTGCCGAACATGCTCTGAAGCATACAATTTCTGATGCAGATCTTTGGAAAGCTTTGTCATCTGTAGAGGAGTTTGAGCAAAAGTA TCTCGAGCTAACCAAAGGTGCTGCTGACAATTACCATCATTCCTGGTGGAAAAGGCATGGAGTTGTTCTCGATGGTGAAATAGCAGCTGTTTGCTTTGGG CATGGAAATTTTGATCTAGCTGCAAAGTCTTATGAGAAAGTTTGTGCCCTTTATGCTGGCGAAGGATGGCAGGAATTATTGGCTGATGTCCTTCCCAATT TAGCTGAGTGCCAGAAGATGCTAAATGATCAAGCTGGCTATTTAGCATCTTGCGTGAGATTGCTGTCTTTAGATAAAGGTTTATTCTCAACAAAGGAGCG CCAAGCATTTCAGGCCGAGGTTCTTCGTCTTGCACACAGTGAGATGAAGGACCCTGTGCCCTTGGATGTTTCATCACTGATTACGTTTTCTGGAAATCCT GGACCTCCCTTGGAGTTATGTGATGGGGATCCTGGTATTCTCTCTGTAACTGTTTGGAGTGGCTTTCCTGATGATATAACTCTTGATTCACTTAACCTCA CTTTGACTGCTACATTTAATGCTGACGAGGGTGCTAAGGCATTAAGGAGCTCTACTGCCACCATACTGAAGCCTGGTAGGAATACCATTACCCTTGCTTT ACCTCCTCAAAAACCAGGTTCCTATGTCTTGGGGGTTCTTACTGGGCAGATTGGTCAGTTGAGATTTAGATCTCATAGTTTTTCAAAGGTTGGCCCAGCG GACAGTGATGATTTCATGAGTTATGAAAAACCCACTAGACCTATACTCAAGGTTTTCAAACCAAGACCACTAGTTGATCTTGCTGCAGCTATTTCATCTG CTTTACTGATAAATGAAACTCAGTGGGTTGGGGTTATAGTACGGCCTATTGACTACTCTCTCAAAGGTGCTGTCTTGTATATTGATACTGGTCCAGGTCT GAATATTGAAGAGTCGCATGTCATTGAGATGGAGACCCGTGTCAATATATCACAGAGCAGTGCTGAAATGACAAACTCTAATGGCACACAAAAGGATTGT TCTTCAGCTTCTAAAAAAGAATTTCAGCAGTTAAAACTTCAAGATGGTAGAATAGAGTTTCCTGCTTGGGCAAGTGATGTAAATTCTGTTCTCTGGATTC CTGTTCGTGCAATCAGTGACAGGCTTCCTAGAGGGTCATCCTCAGTCACCCCTCAGAAACAAAGCAATCTAGATGGCATGAGGACAATTGCTTTGAAACT TGAATTTGGAGTATCCCACAACCAGATATTTGAAAGAACTGTAGCAGTACATTTCACTGATCCTTTCCATGTGAGCACACGTGTTGCAGACAAGTGTAAT GATGGTACTCTGCTGTTGCAGGTGATACTGCATTCCCAAGTGAAGGCTACGTTGACCATATATGATGCTTGGCTTGAGCTTCAAGATGGATTTATTCATA CTGGACAAGGAACTGGAAGACCAACTTCAAGCTTCTTCCCGCTCATGATTTCTCCAACCTCTAGAGCAGGAATCATGTTCAGTATTCGCTTGGGAAAAGT AATTGACAAAGATGAAGTGGAAGCACTGCAGACAGAGAGCATACTAAATATCCGATATGGAATTTATGGTGAGCGAACAAACGGAGCACATCCTCCTGTT TCCGTGGATGGCATTGAACCTGAGGATGCCAGGCAGGACTTGCTATTCAAGAGTGCTATTGTACTGCAGAGACCAGTGCTTGACCCATGCCTGGCTGTTG GTTTTCTTCCTCTTCCTTCAACTGGCCTCAGAGTTGGACAACTCATCACCATGCAGTGGAGAGTTGAAAGATTGAAGGGCCTGGAGGACAATGGAATTTC TGAACACAATGGTGAGGTGCTGTATGAAGTCAGTGCAAATTCTGAAAATTGGATGCTTGCTGGGAGAAAGCGCGGACATGTTACTCTCTCAACAATCCAA GGTTCAAGAATAGTCATCTCAGTATTATGTGTGCCGTTGGTAGCTGGTTATGTCCGCCCTCCTCAACTTGGGCTACCAGATGTTGATGAGTCAAATATAA GCTGCAATCCTCCTGGGCCCCATCTGGTTTGTGTCATGCCTCCAGCTCTCAGCTCCTCCTTCTGCATTCCGCCTTGA
AA sequence Show only first row Show all	>Potri.011G123900.1 pacid=42780334 polypeptide=Potri.011G123900.1.p locus=Potri.011G123900 ID=Potri.011G123900.1.v4.1 annot-version=v4.1 MANYLAQFQTIKNSCDHIVIAVEDVSDLWPNIKSGFDERVPIKRASLNNKTRNPVLVENFPCEFILTTDSRLRSRFPQEQSLFWFREPYATIVLVTCEDL DEFKTILKPRLKLIVQNDEKEWFIVFVSRAHPSNDNAVKMAKKVYAKLEVDFSSKKRERCCKYDIHGPEAIFWDDLESKIMECVRNTLDRRVQFYEDEIR KLTEQRFMPVWNFCNFFILKESLAFMFEMAHLYEDALREYDELELCYLETVNMPGKQREFGGVDHGDDWAALLNPENKPLTQIVQDDSFREFEFRQYLFA YQSKLLFKLNRPFEVASRGHSFIIGFSKALTLHENMLPFCMREVWVITACLAIINATAPNYDGLVAPDIEKEFYRLKGDLYSLCRVKFMRLAYLIGYGAD IERSPVNSALLSMLPWPKPLVWPSVPPDASPEVLEKEKVILQATPKIKHFGIQRKPLPLEPSVLLREANRRRASLSAGNVFEMFDGRPTLIDGSASDASS RTPLLKKMNAISMSRTNSSPGTFDGSVDRPMRLAEIYVAAEHALKHTISDADLWKALSSVEEFEQKYLELTKGAADNYHHSWWKRHGVVLDGEIAAVCFG HGNFDLAAKSYEKVCALYAGEGWQELLADVLPNLAECQKMLNDQAGYLASCVRLLSLDKGLFSTKERQAFQAEVLRLAHSEMKDPVPLDVSSLITFSGNP GPPLELCDGDPGILSVTVWSGFPDDITLDSLNLTLTATFNADEGAKALRSSTATILKPGRNTITLALPPQKPGSYVLGVLTGQIGQLRFRSHSFSKVGPA DSDDFMSYEKPTRPILKVFKPRPLVDLAAAISSALLINETQWVGVIVRPIDYSLKGAVLYIDTGPGLNIEESHVIEMETRVNISQSSAEMTNSNGTQKDC SSASKKEFQQLKLQDGRIEFPAWASDVNSVLWIPVRAISDRLPRGSSSVTPQKQSNLDGMRTIALKLEFGVSHNQIFERTVAVHFTDPFHVSTRVADKCN DGTLLLQVILHSQVKATLTIYDAWLELQDGFIHTGQGTGRPTSSFFPLMISPTSRAGIMFSIRLGKVIDKDEVEALQTESILNIRYGIYGERTNGAHPPV SVDGIEPEDARQDLLFKSAIVLQRPVLDPCLAVGFLPLPSTGLRVGQLITMQWRVERLKGLEDNGISEHNGEVLYEVSANSENWMLAGRKRGHVTLSTIQ GSRIVISVLCVPLVAGYVRPPQLGLPDVDESNISCNPPGPHLVCVMPPALSSSFCIPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Potri.011G123900 [exp]	0	1
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.010G254200 [exp]	2.44	0.9200
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Potri.014G015700 [exp]	6.24	0.8702
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	6.24	0.8968
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	8.00	0.9048
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	8.24	0.9123
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	9.89	0.9198
AT5G11040		AtTRS120	TRS120 (.1)		Potri.018G022500 [exp]	10.67	0.8708
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	12.36	0.9160
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	14.45	0.8876
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	14.96	0.8924

Compare expression of checked genes

Potri.011G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.