Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 311 / 1e-91 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 302 / 1e-87 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 280 / 3e-80 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 276 / 5e-79 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12280 271 / 2e-77 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 266 / 1e-75 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12210 266 / 2e-75 RFL1 RPS5-like 1 (.1) AT1G12220 261 / 9e-74 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61310 261 / 2e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61190 257 / 6e-72 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404800 [exp] 1483 / 0 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.001G405100 [exp] 1449 / 0 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 844 / 0 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.011G127200 [exp] 796 / 0 AT4G27220 290 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 790 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.T045000 [exp] 775 / 0 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.T045200 [exp] 766 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 756 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 752 / 0 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 159 / 3e-39 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 157 / 8e-39 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 140 / 2e-33 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 137 / 2e-32 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 135 / 4e-32 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014922 [exp] 127 / 2e-29 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 125 / 6e-29 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 123 / 3e-28 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 122 / 5e-28 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 120 / 2e-27 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G124000.1 pacid=42781703 polypeptide=Potri.011G124000.1.p locus=Potri.011G124000 ID=Potri.011G124000.1.v4.1 annot-version=v4.1 ATGGAAATGGAAGATTGGATAGAGAGTATGAGAGGGGGGGAGTTGGTGGTTATTGATGAAGCTGGTAGATCAACAGTTTCTCAAGGGCAAGGAGGAGATC TTTTAGACACAGAAAATTTGACAGAGAGCATAACTGTAGAAGGGTATATGCTTATCAACCAAGGTAGAGTTTCGTCGGAAGGGCAAGAGACAGATGTTTC AGATGTGGGAGTGGAGGATTTGACGGATGGCTTCATTATGGTTGCCGACGAAAGTAGGGTTTCTGAAGGGCTTGATACACATAAAGCTAAAGGAGAAGCA TTACTGACAACAGAGCTGGCAGGTCAGGGTTTTGACAAAAATAGGGAGATGATCTGGTCTTGGTTGATGAAGGATGAAGTCTCAAGTATTGGCATTTATG GGATGGGCGGTGTTGGTAAATCATCATTGGCAACGCATATCCATAATCAGCTTCTACAAAGACCAACTTCTTTCAAGCATGTGTTTTGGATTACTGTATC ACAAGATTTTAGCATCAGTAAATTGCAGTATCTTATTGCCAAAGCTATTAATTTAAATCTTTCAAATGAAGATGATGAGAAGAAAAGAGCTGCCAAGTTG TATAAAGCATTAGTTGCAAAGGGAAAATCTGTTCTCATTCTAGATGATTTGTGGAATCATTTTCATCTAGAAAAGGTGGGCATACCTGTTGAAGTGAACA TGTGCAAGCTGATTCTCACAACTCGATCATTGGAAGTTTGCAGGCGGATGGGTTGCCAAGAGAGAATCAAAGTAGAGCTTCTTACTAAGGAAGAAGCTTG GACTTTGTTCAAGGAGAAACTTGGGCATGATGCTGCACTCTCTCCTGAAGTTGAACAGATGGCAAAATTGGTTGCAGCTGAATGTGCTTGTCTGCCACTT GGGATTATAACAATGGCAGGAAGCATGAGGGGAGTGGATGACTTGTATGAGTGGAGGAATGCGTTGACAGAATTGAAACAATCAGAAGTTAGGCCACATG ACATGGAACCTGAGGTATTCCATATTTTGAGATTTAGTTACATGCGCTTGAATGACTCAGCATTGCAACAGTGCCTCTTATACTGTGCATTCTTTCCAGA GGGTTTCACTATGGATAGAGAGGACCTGATAGGGTATTTGATTGATGAGGGGATAATTCAACCAATGAAGAGCAGGCAGGCAGAATTTGATAAAGGTCAG GCTATGCTTAACAATCTTGAAAATGCCTGCTTATTGCAAAGTTATATAAGAAAAGAAAACTACAGATGTTTCAAGATGCATGACTTGATTCGAGATATGG CTCTCCAGAAACTCAGAGAGAACTCCCCAATCATGGTTGAAGTTAGGGAGCGACTAAAAGAATTACCAGGCAAGGATGAGTGGAAAGAGGATCTTGTGAG AGTTTCGTTAATGGAAAATCGCCTCAAGGAAATTCCCTCTAGTTGTTCACCAATGTGTCCCAAACTTTCAACATTATTTCTAAACTCAAATATCGAGCTA GAAATGATTGCAGATTCCTTTTTCAAGCATTTGCAAGGGCTCAAGGTTCTTAATCTATCAAGTACTGCTATCCCGAAATTGCCAGGTTCCTTTTCTGATC TAGTGAATCTCACTGCATTATATCTCAGAAGGTGTGAGAAGCTGAGGCATATACCATCATTAGCAAAGCTTAGGGAGTTGAGGAAATTGGATCTCCGCTA TACTGCACTTGAAGAACTGCCTCAAGGCATGGAAATGCTGTCCAATCTCAGGTATCTTAATCTTCATGGAAACAATCTGAAGGAGTTGCCTGCTGGTATA TTGCCTAACCTCTCCTGTCTAAAATTCCTCAGCATTAACCGGGAAATGGGCTTTTTCAAGACCGAAAGAGTAGAGGAAATGGCATGTTTGAAGAGCTTGG AAACTTTGAGATACCAATTCTGTGATCTTTCTGACTTCAAGAAGTACCTCAAATCTCCAGATGTGAGCCAACCTCTAATCACATATTTCTTCCTAATAGG ACAACTAGGCGTGGATCCAACCATGGATTATTTACTTTATATGACACCAGAGGAAGTCTTTTACAAGGAAGTTTTGCTGAATAATTGCAATATCGGTGAA AAAGGAAGGTTCCTTGAGCTCCCAGAAGATGTTTCAGCTTTGTCAATTGGAAGATGCCATGATGCAAGAAGCTTATGTGATGTTTCTCCATTTAAACATG CACCTTCACTAAAGTCCTTCGTGATGTGGGAGTGTGACAGGATAGAGTGCTTAGTTTCAAAGTCAGAATCCTCCCCAGAAATATTTGAAAGACTTGAGTC TCTATACCTTAAAACTTTGAAGAACTTCTTTGTCCTCATTACAAGAGAAGGATCTGCTACACCGCCACTGCAATCTAATTCTACCTTTGCCCATCTTAAA TCCTTGACAATAGGTGCATGTCCAAGCATGAAGAATCTGTTCTCCCTTGACTTGTTGCCAAATCTCAAAAACTTGGAAGTGATTGAAGTTGATGACTGTC ACAAAATGGAGGAGATAATAGCTATAGAGGAGGAAGAAGAAGGCACTATGGTTAAAGATAGCAATAGAAGCAGCAACCGCAACACAGTTACCAATCTCTC AAAATTAAGGGCTTTGAAATTAAGCAACTTACCGGAGCTGAAGAGCATTTTCCATGGGGTAGTTATCTGTGGCTCTCTACAAGAGATTCTTGTGGTCAAC TGCCCAGAGCTTAAGAGGATTCCCCTCTTTGATCCGGTCCTTGGCATTGGCCAAATACCTCTTCGAAGAATCCAAGCATATCCGAAAGAGTGGTGGGAAC GAGTGGAGTGGGGCAATTCCAACAGCAAGAATGTCCTTCAGCCCCTCTGTGTGTTACAGGAGGCTTTGTATTATTAG
AA sequence Show only first row Show all	>Potri.011G124000.1 pacid=42781703 polypeptide=Potri.011G124000.1.p locus=Potri.011G124000 ID=Potri.011G124000.1.v4.1 annot-version=v4.1 MEMEDWIESMRGGELVVIDEAGRSTVSQGQGGDLLDTENLTESITVEGYMLINQGRVSSEGQETDVSDVGVEDLTDGFIMVADESRVSEGLDTHKAKGEA LLTTELAGQGFDKNREMIWSWLMKDEVSSIGIYGMGGVGKSSLATHIHNQLLQRPTSFKHVFWITVSQDFSISKLQYLIAKAINLNLSNEDDEKKRAAKL YKALVAKGKSVLILDDLWNHFHLEKVGIPVEVNMCKLILTTRSLEVCRRMGCQERIKVELLTKEEAWTLFKEKLGHDAALSPEVEQMAKLVAAECACLPL GIITMAGSMRGVDDLYEWRNALTELKQSEVRPHDMEPEVFHILRFSYMRLNDSALQQCLLYCAFFPEGFTMDREDLIGYLIDEGIIQPMKSRQAEFDKGQ AMLNNLENACLLQSYIRKENYRCFKMHDLIRDMALQKLRENSPIMVEVRERLKELPGKDEWKEDLVRVSLMENRLKEIPSSCSPMCPKLSTLFLNSNIEL EMIADSFFKHLQGLKVLNLSSTAIPKLPGSFSDLVNLTALYLRRCEKLRHIPSLAKLRELRKLDLRYTALEELPQGMEMLSNLRYLNLHGNNLKELPAGI LPNLSCLKFLSINREMGFFKTERVEEMACLKSLETLRYQFCDLSDFKKYLKSPDVSQPLITYFFLIGQLGVDPTMDYLLYMTPEEVFYKEVLLNNCNIGE KGRFLELPEDVSALSIGRCHDARSLCDVSPFKHAPSLKSFVMWECDRIECLVSKSESSPEIFERLESLYLKTLKNFFVLITREGSATPPLQSNSTFAHLK SLTIGACPSMKNLFSLDLLPNLKNLEVIEVDDCHKMEEIIAIEEEEEGTMVKDSNRSSNRNTVTNLSKLRALKLSNLPELKSIFHGVVICGSLQEILVVN CPELKRIPLFDPVLGIGQIPLRRIQAYPKEWWERVEWGNSNSKNVLQPLCVLQEALYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124000 [exp]	0	1
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	2.64	0.8971
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.002G255800 [exp]	4.89	0.8465
AT1G15780			unknown protein		Potri.003G028089 [exp]	6.00	0.8594
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	6.48	0.8817
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.019G018700 [exp]	6.92	0.8804
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	9.48	0.8784
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261600 [exp]	9.53	0.8718	RGA.64
					Potri.001G298233 [exp]	10.00	0.8644
AT2G33580			Protein kinase superfamily pro...		Potri.008G160600 [exp]	11.61	0.8541
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	12.24	0.8736

Compare expression of checked genes

Potri.011G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.