Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 91 / 4e-20 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 82 / 6e-17 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 71 / 4e-13 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G47260 61 / 5e-10 ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases (.1) AT4G10780 61 / 5e-10 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 59 / 2e-09 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43740 58 / 3e-09 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61310 56 / 2e-08 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 54 / 7e-08 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 54 / 8e-08 RFL1 RPS5-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124366 [exp] 624 / 0 AT4G27220 92 / 3e-20 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124100 [exp] 557 / 0 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G404800 [exp] 268 / 5e-82 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.001G405100 [exp] 266 / 2e-81 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 261 / 8e-80 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.001G404875 [exp] 213 / 3e-66 AT4G27220 166 / 5e-45 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014320 [exp] 211 / 3e-64 AT4G27220 124 / 1e-29 NB-ARC domain-containing disease resistance protein (.1) Potri.011G127200 [exp] 215 / 7e-63 AT4G27220 290 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014352 [exp] 212 / 1e-62 AT4G27220 250 / 8e-71 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 48 / 1e-05 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 47 / 1e-05 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 42 / 0.0005 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005017 [exp] 42 / 0.0009 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G124212.1 pacid=42781577 polypeptide=Potri.011G124212.1.p locus=Potri.011G124212 ID=Potri.011G124212.1.v4.1 annot-version=v4.1 ATGAAAAATTACTTAACTGAAATTCCAGCTAGCTATTCACCAAGATGTCCCAATCTTTCTACATTATTGTTATCTCAGAATTACATGCTGCGGTCGATTG AAGGTTCTTTTTTCACACAATTGAATGGACTCGCAGTTCTTGATCTTTCTAATACAGGTATTAAAAGTTTGCCAGGCTCCATATCTAATCTGGTGTGCCT AACTTCATTATTACTCAGGAGGTGTCAACAGCTGAGGCATGTACCAACATTAGCAAAGCTTACAGCATTGAAGAAGTTGGACCTGGTTTACACACAACTT GAAGAATTGCCTGAAGGCATGAAATTGTTGTCCAATCTTAGGTATCTTGACCTCAGTCATACTAGACTAAAACAGTTGTCTGCTGGGATAATACCTAAAC TCTGCCGTCTGCAAGTTCTCGGAGTTCTCTTGTCATCGGAAACTCAGGTGACACTTAAAGGAGAGGAAGTAGCATGCTTGAAGAGGTTGGAAGCTTTGGA ATGCAATTTTTGTGATCTCATTGACTTTAGCAAGTATGTCAAGTCTTGGGAAGATACACAGCCACCGAGAGCTTACTATTTTATAGTAGGACCTGCGGTT CCTTCTCTTTCTGGAATACACAAGACGGAGTTAAATAATACAGTGCGGTTGTGTAACTGTAGTATCAACAGAGAAGCAGATTTTGTGACACTTCCAAAAA CCATTCAAGCCCTGGAAATTGTGCAATGCCACGACATGACGAGCTTATGTGCTGTTTCTTCAATGAAACATGCAATAAAACTAAAATCCTTGGTAATTTG GGATTGTAATGGAATAGCGTGCTTGCTTTCGTTGTCCAGGATCTCCGCCGATACACTCCAAAGCCTTGAGACTCTATGTCTTAGCAGTTTGAAAACTTGT GTGGCCTCTTTAGCAGACAAAGAGCTCCTCCACCTCTATTTCCATTCAAGGGGCGTAGCGTGA
AA sequence Show only first row Show all	>Potri.011G124212.1 pacid=42781577 polypeptide=Potri.011G124212.1.p locus=Potri.011G124212 ID=Potri.011G124212.1.v4.1 annot-version=v4.1 MKNYLTEIPASYSPRCPNLSTLLLSQNYMLRSIEGSFFTQLNGLAVLDLSNTGIKSLPGSISNLVCLTSLLLRRCQQLRHVPTLAKLTALKKLDLVYTQL EELPEGMKLLSNLRYLDLSHTRLKQLSAGIIPKLCRLQVLGVLLSSETQVTLKGEEVACLKRLEALECNFCDLIDFSKYVKSWEDTQPPRAYYFIVGPAV PSLSGIHKTELNNTVRLCNCSINREADFVTLPKTIQALEIVQCHDMTSLCAVSSMKHAIKLKSLVIWDCNGIACLLSLSRISADTLQSLETLCLSSLKTC VASLADKELLHLYFHSRGVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124212 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124366 [exp]	1.00	0.9987
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Potri.010G210000 [exp]	3.46	0.9715
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.015G075600 [exp]	5.47	0.9550
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Potri.003G052500 [exp]	6.70	0.9728	Pt-PSAH.1
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.001G244800 [exp]	10.90	0.9587
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.004G031500 [exp]	11.40	0.9624	PSBQ2.1
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.006G265200 [exp]	11.48	0.9602
					Potri.004G158800 [exp]	12.96	0.9244
AT3G15520			Cyclophilin-like peptidyl-prol...		Potri.001G404700 [exp]	15.09	0.9512
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Potri.003G140400 [exp]	16.43	0.9566

Compare expression of checked genes

Potri.011G124212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.