Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15890 201 / 5e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43740 201 / 9e-57 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 197 / 1e-55 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT4G10780 197 / 2e-55 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 197 / 2e-55 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 197 / 3e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43730 195 / 7e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12220 194 / 2e-54 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61300 192 / 5e-54 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 190 / 6e-53 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124240 [exp] 862 / 0 AT1G15890 201 / 6e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.011G124100 [exp] 785 / 0 AT4G27220 279 / 6e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.001G404800 [exp] 479 / 6e-160 AT4G27220 323 / 5e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.001G405100 [exp] 476 / 8e-159 AT4G27220 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.011G124000 [exp] 470 / 9e-158 AT4G27220 312 / 8e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145582 [exp] 427 / 9e-143 AT4G27220 277 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145578 [exp] 426 / 3e-140 AT4G27220 311 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 426 / 2e-139 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145572 [exp] 422 / 3e-139 AT4G27220 279 / 4e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 115 / 3e-27 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 107 / 3e-25 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 107 / 1e-24 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 104 / 9e-24 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 104 / 1e-23 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 103 / 3e-23 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 102 / 4e-23 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 102 / 5e-23 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 100 / 5e-22 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 99 / 1e-21 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01637 [poplar] [flax] ATPase_2 ATPase domain predominantly from Archaea
Representative CDS sequence Show only first row Show all	>Potri.011G124432.1 pacid=42781317 polypeptide=Potri.011G124432.1.p locus=Potri.011G124432 ID=Potri.011G124432.1.v4.1 annot-version=v4.1 ATGGATTTTGGAATTATGTTGAGAAGAAAAATAATGGTTTCGCCTGTAAGTTTTGTGAGTTTGAATTTGCAGCGCGCACTTCAGTTACTAGGATTAAATC ACATTTATCAGGAATTAAAGGGCTTGGCGTTAGCATATGGAAATCTTTCAGGTATAGAAATAGGAAATTGGGTAGACAGTATGATTGGAGGAGAGATTGT GATTATCGATCAAGGTAGAGCTCCTGAAGTGAGTGAAGCACATCCAGCTAAAGGAAAAGCATTTCAGACAACAGAGCTAGTGGGTCGTGCTTTTGAAAGA AATGTAAGTGAGATCTGGTCGTGGTTAATGAAGGATGATGTCTTAAGTATTGGTATTTACGGGATAGGCGGTGTTGGCAAAACGTCATTGTTGAGACATA TCAATGATCAGCTTCTACAAAGACCAAGCTCTTTCCAGAATGTTTTTTGGATTACTGTAACGCAAGATTTCAGCATTTATAAATTGCAGAATCTCATCGC CAAAGCTGTTGATTTAGATCTTTCAAATGACGAGGATGAGAAGAAAAGAGCTGTGAAATTGTCAAATGGATTGATTGCGAAAAAGAAATTTGTTCTCATT CTAGATGATTTGTGGAATCATTTTTCTCCAGAGAAGGTGGGCGTACCTGTTGGAGTCGATGGATGCAAGTTGATTCTGACAAGTAGATCATTAAGAGTTT GTAGACAGATGTGCTGCCAGGAGAAAATAAAAGTGGAGCCACTTAGCGAGGATGAAGCCTGGACTTTGTTTATGGAGAAACTTGGCATTAATGTTGAACT TCCTTCAGAAGTTATAGAGATTGCAAAATCTGTTGCAAAGGAATGTACTGGTTTGCTACTTTGGATAATAACAATGGCAGGAAGCATGAGGCAAGTGGAT GATATAGGTCAGTGGAGGAATGCGTTGGAGACATTAAAAGAGTCAAAAATTGGGAAGGGTGACATGGAGGCTGATATATTCAAGATAATAGAGTTCAGTT ATATGAACTTGAACGATTCAGCTTTGCAACAAGCTTTCTTATACTGTGCATTGTTTCCTGTAGATTCCGGAATCAGTAGAGAGGACTTAGTAGAGTATAT GATCGTCGAGGGAATCGTTGCAAAAAGGAAGAGCAGACAAGCAGAATCTGATAAGGGCCATGCCATGCTTAATAAACTTGAAAATGCCTGCTTAATAGAA AGTTGTACACGGGAAGGTTATAGATGCGTCCGAATGAATACCTTGGTTAGGGATATGGCCATCAAAATACAGAAAGTGAACTCTCAAGCCATGGTTGAAT CTGGTGGATAG
AA sequence Show only first row Show all	>Potri.011G124432.1 pacid=42781317 polypeptide=Potri.011G124432.1.p locus=Potri.011G124432 ID=Potri.011G124432.1.v4.1 annot-version=v4.1 MDFGIMLRRKIMVSPVSFVSLNLQRALQLLGLNHIYQELKGLALAYGNLSGIEIGNWVDSMIGGEIVIIDQGRAPEVSEAHPAKGKAFQTTELVGRAFER NVSEIWSWLMKDDVLSIGIYGIGGVGKTSLLRHINDQLLQRPSSFQNVFWITVTQDFSIYKLQNLIAKAVDLDLSNDEDEKKRAVKLSNGLIAKKKFVLI LDDLWNHFSPEKVGVPVGVDGCKLILTSRSLRVCRQMCCQEKIKVEPLSEDEAWTLFMEKLGINVELPSEVIEIAKSVAKECTGLLLWIITMAGSMRQVD DIGQWRNALETLKESKIGKGDMEADIFKIIEFSYMNLNDSALQQAFLYCALFPVDSGISREDLVEYMIVEGIVAKRKSRQAESDKGHAMLNKLENACLIE SCTREGYRCVRMNTLVRDMAIKIQKVNSQAMVESGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15890			Disease resistance protein (CC...		Potri.011G124432 [exp]	0	1
AT1G15890			Disease resistance protein (CC...		Potri.011G124240 [exp]	1.00	0.9456
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	11.22	0.7761
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	11.61	0.7963
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.013G012100 [exp]	14.96	0.7333
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.019G072300 [exp]	16.24	0.8056	Pt-SGR2.2
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	26.38	0.7824
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.001G473100 [exp]	27.74	0.7733	PEX5.2
AT4G12640			RNA recognition motif (RRM)-co...		Potri.014G171900 [exp]	33.10	0.7698
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.016G081000 [exp]	34.49	0.7254
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124100 [exp]	41.73	0.7585

Compare expression of checked genes

Potri.011G124432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.