Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) AT1G24430 214 / 1e-64 HXXXD-type acyl-transferase family protein (.1) AT4G15390 214 / 3e-64 HXXXD-type acyl-transferase family protein (.1) AT3G30280 212 / 1e-63 HXXXD-type acyl-transferase family protein (.1) AT5G47950 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) AT5G23970 203 / 2e-60 HXXXD-type acyl-transferase family protein (.1) AT1G24420 199 / 8e-59 HXXXD-type acyl-transferase family protein (.1) AT5G47980 194 / 1e-56 HXXXD-type acyl-transferase family protein (.1) AT4G15400 180 / 2e-51 HXXXD-type acyl-transferase family protein (.1) AT2G19070 114 / 2e-27 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124268 [exp] 931 / 0 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 863 / 0 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 863 / 0 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 860 / 0 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 860 / 0 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 386 / 8e-131 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 382 / 2e-129 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 355 / 3e-119 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 344 / 6e-115 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004441 [exp] 321 / 9e-106 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 300 / 3e-97 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 299 / 9e-97 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 292 / 2e-94 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 289 / 4e-93 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 287 / 1e-92 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 285 / 1e-91 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 275 / 1e-87 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 274 / 3e-87 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 273 / 4e-87 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.011G124500.1 pacid=42780688 polypeptide=Potri.011G124500.1.p locus=Potri.011G124500 ID=Potri.011G124500.1.v4.1 annot-version=v4.1 ATGGACGTCAGTATCATTTCAAGAGAGCTCATCAAACCCTCTTCGCCATCCATCCATCACCTTTCACCGTTCAAGCTGTCCCTTTTGGATCAGCTTTTCC CCACAACTTATGTTCCAATGGTTTTCTTCTACCCAACAAAAAACAACCAAGATTTCAAAGGTTTACAAATCTCAATTCAACTGAAGAGATCACTGTCCCA AACACTATCCACCTTTTACCCTTTATCTGGGAGGGTGAGAAACAACTCTCTTATAGACAACTACGAGAAGGGTGCTCCATTTGTTGAAACCCGAGTGAAG GGGAGTTTGTTCGATTTTCTTATACAACCTCAGCTAAATTCACTGAATAAATTTCTTCCATGCCAACCATTAGGCTATCAATCAGATCCAGAAGCAACAC CACAAGTAGCCATACAAGTTAACACATTTGATTGTGGTGGGACGGCACTCGGTCTCTGCTTTTCACACAAGATCATCGATGTAGCTACGGCGATTGCGTT CCTCGACAGCTGGGCAGCCAACACACGAGGTCATTACCATGAGCAAAAAAATCCTGGTCTTTTTGAGGCGTCATCCCGATTTCCTCCGCTAAATAAATTC TTAGTTCAAGTTCCTTTGTGGGTGACGGAAAACTGCTTGTTCAAAGAAGGAAATGTGACCAAGAGATTCGTTTTTGATGCCGATGCGGTTGCCACTCTAA GGGCTAGGGCTAAAAGCAAACGTGTTCCGAATCCATCTCGCACTGAAACACTGACTGCCTTTATTTGGAAATCCTGCACAGAAGCTTGTAGGTCGTTGCG CGATCTGCCAAGGCCGTCTGTCTCTCTACATGCAGTGAATATAAGACAAAGAACAGAACCTAGCTTTTCAAGATACTCTATTGGAAACCTATGGTGGCGT TCAATGACAGCCTGTGAGTTGGCTGATACCAAGATAGAGTTGAATGATTTGGTGAGCTTAACTAGAGAATCTTTCGCTAATATAAACGATGATCGCCTCA AGGATTTCCAGGGTGAGAACGGGTTTCAAGGCATAACTGTGTCATTGCTGAAACAACTGGTGGGGATAGTCTCGAGAAACCCAGAAATATTTATGTTTTC TAGCTGGCTTAACTTTGATTTAAATGATGTCGATTTTGGATGGGGAAAACCTATATGGGTGGGTCTTACAGGAGAAGTTGGACGCCCTTCAGGTTTTGCA AATATTACTTTCTTCAAACAGACTGGACGAAACAATGAAATTGAGGCGTGGATGACCTTAAATGAAAAAATAATGTCTGCGGTAGAGCGTAACCCTGAGT TCCTCGAATTCTCTACTCCAAATCCTAGTATTTTCATGCCTCATTTATCATCTTAA
AA sequence Show only first row Show all	>Potri.011G124500.1 pacid=42780688 polypeptide=Potri.011G124500.1.p locus=Potri.011G124500 ID=Potri.011G124500.1.v4.1 annot-version=v4.1 MDVSIISRELIKPSSPSIHHLSPFKLSLLDQLFPTTYVPMVFFYPTKNNQDFKGLQISIQLKRSLSQTLSTFYPLSGRVRNNSLIDNYEKGAPFVETRVK GSLFDFLIQPQLNSLNKFLPCQPLGYQSDPEATPQVAIQVNTFDCGGTALGLCFSHKIIDVATAIAFLDSWAANTRGHYHEQKNPGLFEASSRFPPLNKF LVQVPLWVTENCLFKEGNVTKRFVFDADAVATLRARAKSKRVPNPSRTETLTAFIWKSCTEACRSLRDLPRPSVSLHAVNIRQRTEPSFSRYSIGNLWWR SMTACELADTKIELNDLVSLTRESFANINDDRLKDFQGENGFQGITVSLLKQLVGIVSRNPEIFMFSSWLNFDLNDVDFGWGKPIWVGLTGEVGRPSGFA NITFFKQTGRNNEIEAWMTLNEKIMSAVERNPEFLEFSTPNPSIFMPHLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124500 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124268 [exp]	1.00	0.9665
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.015G104200 [exp]	4.58	0.9105
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.003G033200 [exp]	8.71	0.9244
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.005G158800 [exp]	10.39	0.9288
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.002G102900 [exp]	13.30	0.8950
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.008G045800 [exp]	20.83	0.9307
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.014G096500 [exp]	29.56	0.9112
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Potri.013G108200 [exp]	30.29	0.9115
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.008G130000 [exp]	30.59	0.9173
AT2G01755			unknown protein		Potri.008G135400 [exp]	31.55	0.9204

Compare expression of checked genes

Potri.011G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.