Plant FIBer expression Database

Potri.011G125150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05800 98 / 1e-23 unknown protein
AT3G11290 82 / 7e-18 unknown protein
AT3G11310 66 / 2e-12 unknown protein
AT2G19220 59 / 4e-10 unknown protein
AT2G24960 54 / 3e-08 unknown protein
AT4G02210 50 / 7e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G153700
[exp]
422 / 5e-151 AT5G05800 94 / 2e-21 unknown protein
Potri.010G132850
[exp]
419 / 8e-150 AT5G05800 100 / 1e-23 unknown protein
Potri.003G006700
[exp]
419 / 2e-149 AT5G05800 99 / 3e-23 unknown protein
Potri.004G230401
[exp]
419 / 5e-149 AT5G05800 100 / 4e-23 unknown protein
Potri.003G192350
[exp]
419 / 6e-149 AT5G05800 100 / 4e-23 unknown protein
Potri.008G176600
[exp]
417 / 1e-148 AT5G05800 96 / 3e-22 unknown protein
Potri.014G026000
[exp]
416 / 2e-148 AT5G05800 100 / 2e-23 unknown protein
Potri.005G135800
[exp]
416 / 5e-148 AT5G05800 100 / 3e-23 unknown protein
Potri.001G402200
[exp]
414 / 7e-148 AT5G05800 100 / 1e-23 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016838
[exp]
57 / 6e-10 AT2G24960 71 / 4e-14 unknown protein
Lus10014257
[exp]
58 / 1e-09 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10025958
[exp]
57 / 3e-09 AT2G24960 102 / 4e-24 unknown protein
Lus10002039
[exp]
49 / 1e-06 AT3G11290 91 / 2e-20 unknown protein
Lus10024329
[exp]
48 / 2e-06 AT5G05800 81 / 7e-17 unknown protein
Lus10013421
[exp]
41 / 0.0004 AT4G02210 418 / 1e-144 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF12776 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence
>Potri.011G125150.1 pacid=42781868 polypeptide=Potri.011G125150.1.p locus=Potri.011G125150 ID=Potri.011G125150.1.v4.1 annot-version=v4.1
ATGGAAGGTCTTGAATCTTTTGATAAGGTTGCTTGGACAAAGGAAATGTTGCATATATTTTGTGATATATGCATTAAGGCAATTGATATAGGAATGAGAC
CTAATACTCATTTCGATAAAACGGGGTGGAAATTTCTTATAACATCATTCAAAGAACAAACTGGCCATGCATTCACTAAAACACAGTTGAAAAACAAATG
GGATGGATGCAAAAAGGATTGGAGGATATGGAATAAGCTGGTTTCTGAAACTGGTGTTGGCTGGAATAGTGAGTTAGGCACAATTGCAGCTAGCGATGAG
TGGTGGAAACAAAAAATTCAGGAAATTAGAGGAGCCAAAAAATTCAGACATGTTGGTATTGAGCCGTCTTTGAAGAATAAATTTGACCGAATGTATTCCA
ATATTGTCGCAACTGGAGCGTATGCATGGGCTCCTTCATCAGGTGTACCTGCTGGTAGTGATGTCGATCCTGGTACAAGCAATGCCGACATTGCTTATGA
TGGTTTGGAAGAGGGCAGTGGTGATTCGGAGGAAGATGTGATTCCAGATTTCCAGACTGACATGGCTCGAATGGTTGGAGGGATAAATATGTCTAACAGC
AGCAACACAACAAGCGGTGGCAAAAGAAAAGAACGAGATCATTATGATGTGCGAGGTAGAAAGAAGAAAACAGCTGGAATTGGTGTTCAGCTGCTGTCAA
GGTGA
AA sequence
>Potri.011G125150.1 pacid=42781868 polypeptide=Potri.011G125150.1.p locus=Potri.011G125150 ID=Potri.011G125150.1.v4.1 annot-version=v4.1
MEGLESFDKVAWTKEMLHIFCDICIKAIDIGMRPNTHFDKTGWKFLITSFKEQTGHAFTKTQLKNKWDGCKKDWRIWNKLVSETGVGWNSELGTIAASDE
WWKQKIQEIRGAKKFRHVGIEPSLKNKFDRMYSNIVATGAYAWAPSSGVPAGSDVDPGTSNADIAYDGLEEGSGDSEEDVIPDFQTDMARMVGGINMSNS
SNTTSGGKRKERDHYDVRGRKKKTAGIGVQLLSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05800 unknown protein Potri.011G125150
[exp]
0 1
Potri.003G116550
[exp]
2.44 0.9422
AT3G13540 MYB ATMYB5, ATM2 myb domain protein 5 (.1) Potri.003G079100
[exp]
5.74 0.9311
AT5G12980 Cell differentiation, Rcd1-lik... Potri.014G155500
[exp]
15.00 0.8971
AT4G39490 CYP96A10 "cytochrome P450, family 96, s... Potri.015G132800
[exp]
16.97 0.9171 Pt-CYP96.4,CYP96A16v2
Potri.014G007300
[exp]
17.66 0.8997
AT1G78950 ATLUP3 Terpenoid cyclases family prot... Potri.019G079150
[exp]
20.49 0.8689
AT1G32780 GroES-like zinc-binding dehydr... Potri.011G152800
[exp]
23.21 0.9097
AT5G53210 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-h... Potri.012G031800
[exp]
31.67 0.8552
AT1G32780 GroES-like zinc-binding dehydr... Potri.011G152900
[exp]
35.49 0.9040
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G009300
[exp]
40.55 0.8635

Potri.011G125150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.