Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 757 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 699 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 682 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 676 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 664 / 0 ARK2 receptor kinase 2 (.1) AT1G11410 634 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 630 / 0 S-locus lectin protein kinase family protein (.1) AT1G61390 577 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61380 577 / 0 SD1-29 S-domain-1 29 (.1) AT1G11300 573 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125351 [exp] 1462 / 0 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125401 [exp] 1073 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 1054 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 1048 / 0 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 1047 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 911 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 908 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 890 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414200 [exp] 884 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038554 [exp] 855 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 840 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 814 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038557 [exp] 799 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 786 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 785 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 783 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 757 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 730 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 730 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G125151.1 pacid=42781846 polypeptide=Potri.011G125151.1.p locus=Potri.011G125151 ID=Potri.011G125151.1.v4.1 annot-version=v4.1 ATGGGAAGATTTTTAGAGATCTTTGTATGCTGTTTCTTATTCTTCATCTTAACCAACTCCACCACACCAGCTACTATCAATCCAAGCCACTCCATAAGAG ATGGTGAGACTCTACTTTCAGATGGCGGAAGCTTCGAATTAGGATTTTTCAGTCCTGCAAATTCGACAAACCGATACTTGGGTTTATGGTTTAAGAAGTC TCCTCAGGCGGTTTTTTGGGTAGCAAATAGAGAAATTCCACTTTCCAATATGTTGGGAGTCCTGAATATCACCAGCGAAGGGATACTTATCATATACAGT AGCACCAAAGATATTGTCTGGTCGTCGAATTCGTCAAGAACTGCAGAGAATCCAGTCGCAGAGCTCTTGGAGACAGGAAATCTTGTTGTAAGAGAAGAAA ATGATAACAGCACTGCCAACTTTCTGTGGCAGAGTTTTGACTATCCTTGTGACACCTTGCTGCCAGGAATGAAACTGGGAATCAACTTTGTAACTCGGCT TGAAAGCTCTCTGTCATCCTGGAAGAGCTCAGAAGATCCTGCTCGAGGTGAATTTTCTTTCCTTCTAGATCCTAACGGGTATCCGCAGCTACTTTTGACG AAGGGGAATAAAACACAGGTTAGAATTGGGTCATGGAATGGCTTACGTTTTGCTGCAGAAATAATTTCGAAACCTGATTCAATTTCAACGGATGAATTTG TGCTCAACGAGAAGGAGGGATATTTCGTTTTTGGGATCACAAGCTTAGGTTTTCCGAGGCTTACACTAGCTACATCGGGCATTCCACAACGCTCAATATG GAATGATCGAACACATCAATGGCAGTATGTTGAAATTGCCCAGCATGATATATGTGAAAACTATTCTATTTGCGGTCCAAATGCTTACTGCCAGTTCAAT AATTCTCCTATATGCGCATGCCTGGATGGATTCATGCCCAAGTCTCCACGAGATTGGAAGTTGTCAAATTGGTCGGGTGGGTGTGTTCGAAGGACTGCTT GCAGTGACAAAGATCGCTTTCAAAATTATTCACGGATGAAATTGCCTGACACATCTTCTTCCTGGTATAATAAAAGCACTGGTCTCGAGGAATGTAAGGG AATATGTTTGAAGAACTGCTCCTGCACTGCATATGCAAATTTAGATATCAGAGGAGGTGGAAGTGGCTGCCTGGTTTGGTTTGGTAGCCTCGTTGATACA AGAAGGTCAAATGGGGATGGACAAGACCTTTATGTCAGGATTGCGGTTTCAGAATTAGAAAATGTTGAGAAAAAAAGACCCGTTGATAAGAAGAAGCAAG CAGTAATAATTGCTAGCTCTGTCATATCGGTTCTAGGTTTGCTGATACTAGGAGTTGTCTGCTACACGAGGAAAACATATCTCAGAACGAATGACAACAG CGAAGAGAGGAAAGAAGACATGGAGATACCTATGTATGATTTGAACACGATAGCACATGCCACTAATAATTTCTCTAGCATGAACAAGCTGGGAGAAGGC GGTTTTGGACCAGTATTCAAGGGTACATTGGTAGATGGACAAGAAATAGCAGTGAAAAGGCTCTCCAAAAGTTCTGGGCAAGGAATGGACGAGTTCAAGA ATGAAGTTGTGTTAATTGCTAAACTTCAGCACCGCAACCTTGTGAAGCTTCTTGGTTTTTGCATCCATAAAGATGAAAAAATGTTAATCTATGAATACAT GCCAAACAAGAGCTTGGACTCCATTATTTTTGATTTAACCAGAAGGAAATTACTGAATTGGAGAAGGCGTATCCACATCATTGGAGGAATAGCTCGAGGG CTTGTTTATCTTCACCAAGACTCTAGACTGAGGATCATTCATAGAGACATTAAAGCCAGCAACATTTTACTGGATAATGAGCTAAACCCAAAAATTTCAG ATTTTGGCCTTGCTCGAATGTTTGGTGGAGATCAAGTGGAGGCCAATACTAATAGGGTAGTTGGGACATATGGATATATGTCTCCTGAGTACGCATTAGA TGGACACTTCTCTGTGAAATCGGATGTCTTCAGTTTCGGTGTCCTAGTTCTGGAGATTGCGAGTGGAAAGAAAAACAGGGGATTTTGTCACCCGGACCAG AACCTTAACCTTCTTGGACATGCATGGATTCTTTGGACCGAAGGAACACCATTGGACCTGATTGATGAAGGTTTGAGTGACTCGCGCAATCTAGCTGAAC TTTTAAGATGCATTCATGTGGCTTTATTATGTGTGCAACAGCGACCAGAAGACAGACCAACCATGTCGACTGTGGTTGTAATGTTAGGCAGTGAGAATCC ATTGCCTCAGCCTAAGCAGCCTGGTTTTTTTATGGGAAAGAATCCATCTGAAAAGGACAGTTCATCATCAAACAAGCATGAAGCTCATTCAGCAAATGAG GTTAGTCTGACATTATTAGAGGCACGGTAG
AA sequence Show only first row Show all	>Potri.011G125151.1 pacid=42781846 polypeptide=Potri.011G125151.1.p locus=Potri.011G125151 ID=Potri.011G125151.1.v4.1 annot-version=v4.1 MGRFLEIFVCCFLFFILTNSTTPATINPSHSIRDGETLLSDGGSFELGFFSPANSTNRYLGLWFKKSPQAVFWVANREIPLSNMLGVLNITSEGILIIYS STKDIVWSSNSSRTAENPVAELLETGNLVVREENDNSTANFLWQSFDYPCDTLLPGMKLGINFVTRLESSLSSWKSSEDPARGEFSFLLDPNGYPQLLLT KGNKTQVRIGSWNGLRFAAEIISKPDSISTDEFVLNEKEGYFVFGITSLGFPRLTLATSGIPQRSIWNDRTHQWQYVEIAQHDICENYSICGPNAYCQFN NSPICACLDGFMPKSPRDWKLSNWSGGCVRRTACSDKDRFQNYSRMKLPDTSSSWYNKSTGLEECKGICLKNCSCTAYANLDIRGGGSGCLVWFGSLVDT RRSNGDGQDLYVRIAVSELENVEKKRPVDKKKQAVIIASSVISVLGLLILGVVCYTRKTYLRTNDNSEERKEDMEIPMYDLNTIAHATNNFSSMNKLGEG GFGPVFKGTLVDGQEIAVKRLSKSSGQGMDEFKNEVVLIAKLQHRNLVKLLGFCIHKDEKMLIYEYMPNKSLDSIIFDLTRRKLLNWRRRIHIIGGIARG LVYLHQDSRLRIIHRDIKASNILLDNELNPKISDFGLARMFGGDQVEANTNRVVGTYGYMSPEYALDGHFSVKSDVFSFGVLVLEIASGKKNRGFCHPDQ NLNLLGHAWILWTEGTPLDLIDEGLSDSRNLAELLRCIHVALLCVQQRPEDRPTMSTVVVMLGSENPLPQPKQPGFFMGKNPSEKDSSSSNKHEAHSANE VSLTLLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	1.41	0.9757
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125351 [exp]	2.23	0.9673
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	2.44	0.9706
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	2.64	0.9608
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152301 [exp]	4.00	0.9676
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.006G009800 [exp]	6.00	0.9489
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	6.24	0.9481
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	6.70	0.9587
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	6.92	0.9426
AT1G18810			phytochrome kinase substrate-r...		Potri.015G062600 [exp]	8.36	0.9539

Compare expression of checked genes

Potri.011G125151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.