Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 824 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 729 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 726 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 692 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 689 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 665 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 659 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 635 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 623 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 620 / 0 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125501 [exp] 1367 / 0 AT4G27290 709 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 1185 / 0 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 1125 / 0 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 1118 / 0 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 1110 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 1101 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 976 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 954 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 952 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038554 [exp] 911 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 893 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 876 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 855 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 842 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 839 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 827 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 814 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 781 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 778 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G125401.1 pacid=42782197 polypeptide=Potri.011G125401.1.p locus=Potri.011G125401 ID=Potri.011G125401.1.v4.1 annot-version=v4.1 ATGGGAGCTTTTACAGTGCTGTTTGCATGCTCCTTATTCTCTATGTTAATCAACTCCGCCACATCAAACATAATCTACCCAAGCCAATCCATAAGAGATG GTGCAACTCTCCTTTCAACCGGGGGAAAATTTGAACTAGGATTTTTCAGCCCTGGAAATTCAACAAAACGTTTCTTGGGAATATGGTATAAGAAGTCTCC TCGTACAGTTATATGGGTAGCAAACAGAGAAGTTCCACTTTCCAATACTTTGGGGGCTCTGAATATAAGCAGCAAAGGGATACTTGTCCTGTACAGTAGC ACAAATGATATTGTTTGGTCATCGAATTCATCAAGAACTGCAGAGGATTCAGTTGCAGAGCTCTTGGAGACAGGTAATCTTGTTGTGAGAGAAGGGAATG ATAGTAATCCCGACAACTTTCTGTGGCAGAGTTTTGACCATCCAGGTGACACCATGATATTAGGAATGAAATTGGGGAGCAACTTCGTAACAAAGATTGA CAAGTTTTTATCATCTTGGAAGAGTGCTGAAGATCCTGCTCGAGGTGAATATTCTTTCGTTATAGATACTCATGGGTATCCCCAGCTACTTCTGAAGAGG GGAAACATTACTCTGTTTAGAGCGGGGCCATGGAATGGCATAAAATTCATAGCAAATCCTAGACCGATACCTATTTCCAATGAATTTGTTTTCAACAGCA AAGAGATTTATTTCCAGTTTGGAGCCCAAACATCAGTCCTTTCAAGGCTCACTCTCAGTCCATTGGGCCTTCCACAGAGCTTCACATGGAATGACCGGAC AAATGATTGGGTGATTACTGACGTTGGCCAGTTTGATCAGTGTGAAAATTATGCCTTTTGTGGTCCAAATACTCGCTGTGAGATGAGTAGATCTCCTATA TGTGCATGCTTGGATGGATTCATTCCCAAGTCTCTAGCAGATTGGAACTTTTCAGATTGGTCAGATGGGTGTATCCGGAGAACTCCGCTAGAATGCAGCG ACAAGGTTGGCTTTCTGAAATATACAGGGATGAAATTGCCGGACACATCGTCTTCCTGGTACGACAAGAGCATCAGTCTCAAGGAATGTCAGGGATTATG TTTGAAGAACTGTTCCTGCACTGCTTATGCAAATTTAGATATCAGGCAAGGTGGAAGTGGATGCCTGATCTGGTTTGGTGACCTGATTGATACAAGAAGG TCAACTGGGGATGGACAAGACCTTTTTGTTAGGATGAATGCTTCAGAATTGGGTGTACCTACGAAAAAGAGGACATTTAGTAAGAAGCTAGCAGGAATAG TCTCCAGCGCAATAGTAGCAGGCATTGGCATGCTAATGTTAGGATTCATCATTTCCATGCGGAAGTGGAATCTTAGAAAGAAAAACCACTGTGAAGAAAG GGAGGAAGATATGCAATTGCCAATATTTGACATGAGTACTATAGCACATGCCACCGATGCTTTTTCAAACAGCAACAAACTTGGAGAAGGTGGTTTTGGA CCCGTATACAAGGGAATACTCATAGGAGGGCAACAAATAGCAGTGAAAAGGCTTTCAAAGAGTTCAGGTCAAGGATTGGATGAGTTCAAAAATGAAGTTA TGTTAATTGCTAAACTTCAGCACCGCAGTCTTGTAAAGCTTCTGGGTTGTTGCATTCATGAAGATGAAAGAATGTTAATTTACGAATACATGCCCAACAA GAGCTTGGACTCCTTTATTTTTGACCAAACAGGAAGAAAACTACTTGATTGGAGTCAGCGTATCAACATTATAGGTGGAATTGCTCGAGGGCTTCTTTAT CTGCATCAAGACTCTAGACTTAGAATCATCCACAGAGATATCAAAGCCAGCAACATTTTACTGGATGATGCGGTAAACCCAAAAATTTCTGACTTTGGCC TTGCTAGAATGTTCGGTGGAGATCAAACAGAGGCCAAAACTAGTAGGATAGTTGGAACATATGGCTACATGTCTCCCGAGTATGCATCGAATGGATACTT TTCAGTGAAATCTGACGCTTTTAGCTTCGGTGTTCTAGTCCTCGAGATCGTGAGCGGAAAGAAAAATAGGGGATTTCGTCACCTGGACCCCAACCTTAAC CTTCTTGGACATGCGTGGATGCTTTGGATTAAAGGGACACCATTTGAGCTGATTGATGAATTTTTGATTGAGTCGTGCAATTTATCTGAAGTGCTAAGAT GCATTCATGTGGCTTTATTATGTGTGCAACAACGCCCGGAAGATAGGCCAAACATGTCAGCTGTGGTTCTAATATTAGGAAGTGAGATTCCATTGCCGCA GCCTAAACAACCTGGTTTTTTTATGGGGGAGAATCCACATGAACACAGCACTTCCTCAAACAGCCATGTAACTTATTCAGGTGACGAGGTTAGTTTGATC TCATTAGATCCCCGGTAG
AA sequence Show only first row Show all	>Potri.011G125401.1 pacid=42782197 polypeptide=Potri.011G125401.1.p locus=Potri.011G125401 ID=Potri.011G125401.1.v4.1 annot-version=v4.1 MGAFTVLFACSLFSMLINSATSNIIYPSQSIRDGATLLSTGGKFELGFFSPGNSTKRFLGIWYKKSPRTVIWVANREVPLSNTLGALNISSKGILVLYSS TNDIVWSSNSSRTAEDSVAELLETGNLVVREGNDSNPDNFLWQSFDHPGDTMILGMKLGSNFVTKIDKFLSSWKSAEDPARGEYSFVIDTHGYPQLLLKR GNITLFRAGPWNGIKFIANPRPIPISNEFVFNSKEIYFQFGAQTSVLSRLTLSPLGLPQSFTWNDRTNDWVITDVGQFDQCENYAFCGPNTRCEMSRSPI CACLDGFIPKSLADWNFSDWSDGCIRRTPLECSDKVGFLKYTGMKLPDTSSSWYDKSISLKECQGLCLKNCSCTAYANLDIRQGGSGCLIWFGDLIDTRR STGDGQDLFVRMNASELGVPTKKRTFSKKLAGIVSSAIVAGIGMLMLGFIISMRKWNLRKKNHCEEREEDMQLPIFDMSTIAHATDAFSNSNKLGEGGFG PVYKGILIGGQQIAVKRLSKSSGQGLDEFKNEVMLIAKLQHRSLVKLLGCCIHEDERMLIYEYMPNKSLDSFIFDQTGRKLLDWSQRINIIGGIARGLLY LHQDSRLRIIHRDIKASNILLDDAVNPKISDFGLARMFGGDQTEAKTSRIVGTYGYMSPEYASNGYFSVKSDAFSFGVLVLEIVSGKKNRGFRHLDPNLN LLGHAWMLWIKGTPFELIDEFLIESCNLSEVLRCIHVALLCVQQRPEDRPNMSAVVLILGSEIPLPQPKQPGFFMGENPHEHSTSSNSHVTYSGDEVSLI SLDPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125401 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Potri.014G132000 [exp]	1.00	0.9704
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125501 [exp]	2.44	0.9598
					Potri.001G130800 [exp]	3.74	0.9648
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Potri.018G075000 [exp]	5.83	0.9470
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	6.63	0.9622
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	7.34	0.9633
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Potri.005G144000 [exp]	8.71	0.9351	IFS1.49
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	10.90	0.9597
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	10.95	0.9601
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246500 [exp]	15.29	0.9507

Compare expression of checked genes

Potri.011G125401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.