Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 709 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 664 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 626 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 611 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 606 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 578 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 572 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 561 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 523 / 3e-176 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 518 / 4e-174 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125401 [exp] 1343 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 1012 / 0 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 925 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 918 / 0 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 911 / 0 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 895 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 820 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 811 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 800 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038554 [exp] 787 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 773 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 756 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 745 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 731 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 728 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 719 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 691 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 687 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 685 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G125501.1 pacid=42781471 polypeptide=Potri.011G125501.1.p locus=Potri.011G125501 ID=Potri.011G125501.1.v4.1 annot-version=v4.1 ATGATAGTAATCCCGACAACATTTCTGTGGCAGAGTTTTGACCATCCAGGTGACACCATGATATTAGGAATTAAATTGGGGAGCAACTTCGTAACAAAGA TTGACAAGTTTTTATCATCTTGGAAGAGTGCTGAAGATCCTGCTCGAGGTGAATATTCTTTCGTTATAGATACTCATGGGTATCCCCAGCTACTTCTGAA GAGGGGAAACATTACTCTGTTTAGAGCGGGGCCATGGAATGGCATAAAATTCATAGCAAATCCTAGCCCGATACCTATTTCCGATGAATTTGTTTTCAAC AGCAAAGAGGTTTATTTCCAGTTTGGAAATCAAACATCAGTCCTTTCAAGGCTCACACTCAGTCCATTGGGCCTTCCACAGAGCTTCACATGGAATGACC GAACAAATGATTGGGTGATTACTGACGTTGGCCAGTTTGATCAGTGTGAAAATTATGCCTTTTGTGGTCCAAATACTCGCTGTGAGATGAGTAGATCTCC TATATGTGCATGCTTGGATGGATTCATTCCCAAGTCTCTAGCAGATTGGAACTTTTCAGATTGGTCAGATGGGTGTATCCGGAGAACTCCGCTAGAATGC AGCGACAAAGTTGGCTTTCTTAAATATACAGGGATGAAATTTCCCGACACATCGTCTTCCTGGTACGACAAGAGCATCAGTCTCAAGGAATGTCAGGGAT TATGTTTGAAGAACTGCTCGTGCACTGCTTATGCAAATTTAGATATCAGGCAAGGTGGAAGTGGATGCCTGATCTGGTTTGGTGACCTGATTGATACAAG AAGGTCAACTGGGGATGGACAAGACCTTTTTGTTAGGATGAATGCTTCAGAATTGGGTGTACCTACGAAAAAGAGGACATTTAGTAAGAAGCTAGCAGGA ATAGTCTCCAGCGCAATAGTAGCAGGCATTGGCATGCTAATGTTAGGAATCATCATTTCCATGCGGAAGTGGAATCTTAGAAAGAAAAACCACTGTGAAG AAAGGGAGGAAGATATGGAATTGCCAATATTTGACATGAGTACTATAGCACATGCCACCGATGCTTTTTCAAACAGCAACAAACTTGGAGAAGGTGGTTT TGGACCCGTATACAAGGGAATACTCATAGGAGGGCAACAAATAGCAGTGAAAAGGCTTTCAAAGAGTTCAGGTCAAGGATTGGATGAGTTCAAAAATGAA GTTATGTTAATTGCTAAACTTCAGCACCGCAGTCTTGTAAAGCTTCTGGGTTGTTGCATTCATGAAGATGAAAGAATGTTAATTTACGAATACATGCCCA ACAAGAGCTTGGACTCCTTTATTTTTGACCAAACAGGAAGAAAACTACTTGATTGGAGTCAGCGCATCAACATTATAGGTGGAATTGCTCGAGGGCTTCT TTATCTGCATCAAGACTCTAGACTTAGAATCATCCACAGAGATATCAAAGCCAGCAACATTTTACTGGATGATGAGCTAAACCCAAAAATTTCTGACTTT GGCCTTGCTAGAATGTTCGGTGGAGATCAAACAGAGGCCAAAACTAGTAGGATAGTTGGAACATATGGCTACATGTCTCCCGAGTATGCATCGAATGGAT ACTTTTCAGTGAAATCTGACGCTTTTAGCTTCGGTGTTCTAGTCCTCGAGATTGTGAGCGGAAAGAAAAATAGGGGATTTCGTCACCTGGACCCCAACCT TAACCTTCTTGGACATGCGTGGATGCTTTGGATTAAAGGGACACCATTTGAGCTGATTGATGAATTTTTGATTGAGTCGTGCAATTTATCTGAAGTGCTA AGATGCATTCATGTGGCTTTATTATGTGTGCAACAACGCCCGGAAGATAGGCCAAACATGTCAGCTGTGGTTCTAATATTAGGAAGTGAGATTCCATTGC CGCAGCCTAAACAACCTGGTTTTTTTATGGGGGAGAATCCACATGAACACAGCACTTCCTCAAACAGGCATGTAACTTATTCAGGTGAGGAGGTTAGTTT GATCTCATTAGATCCCCGGTAG
AA sequence Show only first row Show all	>Potri.011G125501.1 pacid=42781471 polypeptide=Potri.011G125501.1.p locus=Potri.011G125501 ID=Potri.011G125501.1.v4.1 annot-version=v4.1 MIVIPTTFLWQSFDHPGDTMILGIKLGSNFVTKIDKFLSSWKSAEDPARGEYSFVIDTHGYPQLLLKRGNITLFRAGPWNGIKFIANPSPIPISDEFVFN SKEVYFQFGNQTSVLSRLTLSPLGLPQSFTWNDRTNDWVITDVGQFDQCENYAFCGPNTRCEMSRSPICACLDGFIPKSLADWNFSDWSDGCIRRTPLEC SDKVGFLKYTGMKFPDTSSSWYDKSISLKECQGLCLKNCSCTAYANLDIRQGGSGCLIWFGDLIDTRRSTGDGQDLFVRMNASELGVPTKKRTFSKKLAG IVSSAIVAGIGMLMLGIIISMRKWNLRKKNHCEEREEDMELPIFDMSTIAHATDAFSNSNKLGEGGFGPVYKGILIGGQQIAVKRLSKSSGQGLDEFKNE VMLIAKLQHRSLVKLLGCCIHEDERMLIYEYMPNKSLDSFIFDQTGRKLLDWSQRINIIGGIARGLLYLHQDSRLRIIHRDIKASNILLDDELNPKISDF GLARMFGGDQTEAKTSRIVGTYGYMSPEYASNGYFSVKSDAFSFGVLVLEIVSGKKNRGFRHLDPNLNLLGHAWMLWIKGTPFELIDEFLIESCNLSEVL RCIHVALLCVQQRPEDRPNMSAVVLILGSEIPLPQPKQPGFFMGENPHEHSTSSNRHVTYSGEEVSLISLDPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125501 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125401 [exp]	2.44	0.9598
AT5G61820			unknown protein		Potri.015G108800 [exp]	3.46	0.9289
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.011G070100 [exp]	6.24	0.9114	WRKY65.2
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Potri.001G234700 [exp]	7.48	0.9154
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	12.72	0.9303
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.004G205500 [exp]	12.96	0.9105	Pt-NIN.1
AT1G34300			lectin protein kinase family p...		Potri.016G102500 [exp]	13.19	0.8994
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Potri.005G144000 [exp]	16.24	0.9128	IFS1.49
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	17.88	0.9239	NAC021
AT5G47070			Protein kinase superfamily pro...		Potri.014G052700 [exp]	19.07	0.8741

Compare expression of checked genes

Potri.011G125501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.