Plant FIBer expression Database

Potri.011G125600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G409000
[exp]
381 / 3e-133 AT4G27330 / NOZZLE, sporocyteless (SPL) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08744 NOZZLE Plant transcription factor NOZZLE
Representative CDS sequence
>Potri.011G125600.2 pacid=42781339 polypeptide=Potri.011G125600.2.p locus=Potri.011G125600 ID=Potri.011G125600.2.v4.1 annot-version=v4.1
ATGGCTACTCCACTTTCGCTATTTCTCATGCCTAACAATGATAACAAACAAGAACCTACCCAGACCATGGCCATAAGCACCAAACCAGCTGAACCGGCAA
GAAGAAGTACTGCTACTAATCAGAGCAAAAGGCCTACCACCAGCAAATGTCAAACTCGCAAGAAACAATGCCAAAGAGGCATGGGAGTAGCTCAACTTGA
AAGTTTAAGGATTCAAGAAAGATGGAAGGCTATTACTGAAGCGAACCAGAATATTGGTGCTCTCAATCTCCAACCCACCCAGCAGTTACATGATCACTAC
CCGTCTAATTATAATACTGATAATAATAATCAAATGCTGCAGTATGGTACTACAGTTAACCGTGGTGTGCCAATGAGTAGTAATGGTGGTGTTTTTAATG
GTTTCTTGGGTTGGGATCACCAGGGTGGTGTGGTGGTTAAGAGGGTTGATGGGTTTAATGTGAATAATAATGATGGGTTTGGGTCGGGTCAGGTTTTTGT
TAACCCGTATTTGGTTGGATCAGTTCCGGTTCATCAGGTTGGGGCTCCTGCTCCTGTCTTTGAGGCTTCGAAAGAGCTCTCTTCAATCCCAAAAGTAATG
CAGCATCAGCAATACGAGCCTTCTCGTTGTGATCTTTGCTTTAAGATGGGTGGATTCAGTGCCAGAGCTGCAAGGAGTGCTCCCTACGCCAATCACAACC
ACAACAACAATGAGGGTACTTCAGAGGTGATGGCAGTTCACAGAAAGGGCAATAACCCATTGGGCAGAAATGTTATCATGGAATATGAGTTTTTCCCTGG
AAAAAATGGTGAAAACACTTGTTTCAAGGAGATGGAATTTCCCCCTCCAGAAGCTTCAGTTGCAGTGGGAACTGGTGAAGCTTTTTGTGTTACAACTTAC
TCTGATTACAGTGGTTACAGTGCATCTAATGCTTCTAATTCTATTGACTTGTCTCTGAAGCTTTCATATTAG
AA sequence
>Potri.011G125600.2 pacid=42781339 polypeptide=Potri.011G125600.2.p locus=Potri.011G125600 ID=Potri.011G125600.2.v4.1 annot-version=v4.1
MATPLSLFLMPNNDNKQEPTQTMAISTKPAEPARRSTATNQSKRPTTSKCQTRKKQCQRGMGVAQLESLRIQERWKAITEANQNIGALNLQPTQQLHDHY
PSNYNTDNNNQMLQYGTTVNRGVPMSSNGGVFNGFLGWDHQGGVVVKRVDGFNVNNNDGFGSGQVFVNPYLVGSVPVHQVGAPAPVFEASKELSSIPKVM
QHQQYEPSRCDLCFKMGGFSARAARSAPYANHNHNNNEGTSEVMAVHRKGNNPLGRNVIMEYEFFPGKNGENTCFKEMEFPPPEASVAVGTGEAFCVTTY
SDYSGYSASNASNSIDLSLKLSY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27330 NZZ NZZ, SPL NOZZLE, sporocyteless (SPL) (.... Potri.011G125600
[exp]
0 1
AT2G26430 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3... Potri.010G218001
[exp]
4.89 0.6630
AT1G57775 Protein of unknown function (D... Potri.004G114901
[exp]
10.58 0.5645
AT4G27310 CO B-box type zinc finger family ... Potri.004G027000
[exp]
13.85 0.5157
AT4G00755 F-box family protein (.1.2) Potri.014G076200
[exp]
16.73 0.5202
AT4G24972 TPD1 tapetum determinant 1 (.1) Potri.008G105600
[exp]
21.63 0.5465
Potri.004G021400
[exp]
25.51 0.5199
AT5G55390 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) Potri.014G163301
[exp]
32.01 0.5146
Potri.016G039401
[exp]
38.53 0.4765
AT3G59850 Pectin lyase-like superfamily ... Potri.017G005900
[exp]
42.57 0.4904
AT1G05580 ATCHX23 cation/H+ exchanger 23, cation... Potri.007G111400
[exp]
43.71 0.4857 ATCHX23.1

Potri.011G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.