Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 915 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 774 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 727 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 719 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 716 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 711 / 0 ARK2 receptor kinase 2 (.1) AT1G11410 689 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 686 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 682 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 676 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G413700 [exp] 1384 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 1064 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 974 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412100 [exp] 973 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.010G018600 [exp] 967 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 967 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 965 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 964 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 962 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 1189 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 951 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014810 [exp] 934 / 0 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 874 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 863 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 862 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 858 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 853 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 840 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 836 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G125601.1 pacid=42780972 polypeptide=Potri.011G125601.1.p locus=Potri.011G125601 ID=Potri.011G125601.1.v4.1 annot-version=v4.1 ATGAAAGGTCTTACACTAGTTTCTTTATGTTCCATCTTCTTCATCTTCACAACCGCCGATGGTGCAGATACCATAGCTGTAAACCAGTCAATCATAGATG GAGAGACCATAGTTTCAGCTGGGAGCAACTTTGAGCTAGGATTTTTTAGCCCTCGAAGTACAAGTTTGCGTTATGTAGGAATATGGTACAAGTTCTCTAG TGAGACTCTGGTTTGGGTTGCCAACAGAGAAGCACCACTCAATGACACATCAGGTGTTTTGCAAGTGACCAGCAAGGGAATCCTTGTCCTTCATAATTCA ACAAATGTTGTTTTATGGTCTACTAATACATCAAGAGTACCGCAGAATCCAGTAGCTCAGCTTTTGGATTCAGGAAATCTTGTTATAAGAGAAGCAAATG ATACAAACGAGGATGATTACTTGTGGGATAGTTTTGACTATCCTGGTAACACGTTTTTGCCAGGCCTCAAGTTTGGCAGAAATTTGATTACTGGCCTTGA TCGGTACTTGGTGTCATGGAAAAGCACTAATGATCCTTCATTGGGTGATTCTACAACTATGCTTGATCCTGGTGGATATCCGCAGATATTTATCAGGGTT GGTGAGAACATAATTTTCCGATCAGGACCATGGAATGGTCTTAAATTCAGTGGGATGCCTAATTTGAAACCGAACCCAATTTACACATACGAGTTTGTTT ACAATGAGAAGGAGATTTATTACAGGTACGATCTGACAGACAGTTCAGTTGTGACGCGTATGTTGCTGACCAATGATGGGATTTTGCAGCGTTTCACCTG GACTAGTAGTACAAGAACATGGAATCTGTACTTGACAGCCCAGATGGATAATTGTGATAGGTATGCAGTATGTGGTGCATATGGAATTTGTAACATCGAC AATTCCCCTGCTTGTGCATGCTTGGACGGATTTCAGCCAAAGTCTCGTCAAGATTGGGATTCTGGGGATTGGTCTGGAGGATGCGTTAGGAAGAATGAAT CAATTTGCAGGGCAGGAGAGGGTTTTCAGAAGGTAACAAGTGTGAAATTGCCAGATACAAGGACATCCTCGTTTAATATGACAATGGACCTTGAAGAATG TCGAAGGGTTTGCTTGATGAATTGTTCTTGCACAGCTTATTCGACTTTGAATATAACAGATGGAACTGGATGCTTGCTTTGGTTTGAGGATCTTCTTGAT ATCAGAGAGTACACTGAAACTGGACAAGATTTTTACATTAGATTATCTGCCTCTGATTTAGAGCCAACTAGAAGTCCTAAGAGGACGACGCGAGTGTGGA TTATAGCCATCTGTTTGTTGGTTGCTGGAATTACCATCCTAGGCTTTTGCCTGCTGTTTCTGATGAGGAGGAGGAAGATGAAGACAGCAGCAAGGATGGT TTCGATGCAAGAAAGAGACTACTCAATTAATAGCACCGGTAAAGATTTAGAGCTTCCAGTATTTGACTTCGCAACCATAGCTATTGCCACGAGCAATTTC TCAGGGGCCAATAAGCTTGGAGAGGGTGGATTCGGACCTGTCTACAAGGGCAAGCTAGAAGATGGACAAGAGATAGCTGTGAAAAGGCTTTCAAAGACTT CGACACAAGGACTTGATGAATTCAAGAACGAAGTTATATGCATTGCGAAACTTCAACACCGAAATCTTGTCAAGCTTCTTGGTTGCTGCATTGAATCCGA AGAAACAATGTTGGTCTATGAATATATGCCTAACAAAAGTTTGGATGCCTTCATCTTTGATCAAAAGCAGAGCAAGTTATTGGACTGGTCTATGAGGTAC AACATTATCAATGGGGTAGCTCGAGGACTTCTTTACCTCCATCAAGATTCCCGGCTAAGAATCATTCATAGAGATCTAAAAGCCAGCAATATACTTGTGG ACTATGATATGAACCCAAAAATCTCAGATTTTGGCATGGCCAGGAGTTTTGGTGGAAATGAAATTCAGGGAAACACAAAACGAGTAGTTGGAACATATGG TTACATGTCTCCAGAATATGCAACTGACGGGATCTTTTCTATAAAATCCGATGTATTTAGTTTCGGTGTTTTGGTGCTAGAGATAGTAAATGGGAAGAGA AATAGAGGATTCATTCATCAAGACCATAAGCACAACCTTCTTGGTCATGCATGGAAACTTTACAAGGAAGAAAGGTCATTCGAGCTAATCAACGATTCTT TAAAAGACACCTGCAACTTATCCGAAGTTTTACGGGTGATCCATGTGGGTCTCCTGTGTGTGCAACAAGCTCCTGAGGATAGGCCTACTATGTCAACTGT GGTGCTAATGTTAAGTAGTAACATTGCATTGCCTGACCCTAAAGAGCCTGGATTTTTCACAGAAAGGAAACTATTCGATCATGAGTCTTCATCTAGCAAG GTCGATACATGTTCCGCGAACGAAATTACTATCACATTGTTAACTGCTCGATGA
AA sequence Show only first row Show all	>Potri.011G125601.1 pacid=42780972 polypeptide=Potri.011G125601.1.p locus=Potri.011G125601 ID=Potri.011G125601.1.v4.1 annot-version=v4.1 MKGLTLVSLCSIFFIFTTADGADTIAVNQSIIDGETIVSAGSNFELGFFSPRSTSLRYVGIWYKFSSETLVWVANREAPLNDTSGVLQVTSKGILVLHNS TNVVLWSTNTSRVPQNPVAQLLDSGNLVIREANDTNEDDYLWDSFDYPGNTFLPGLKFGRNLITGLDRYLVSWKSTNDPSLGDSTTMLDPGGYPQIFIRV GENIIFRSGPWNGLKFSGMPNLKPNPIYTYEFVYNEKEIYYRYDLTDSSVVTRMLLTNDGILQRFTWTSSTRTWNLYLTAQMDNCDRYAVCGAYGICNID NSPACACLDGFQPKSRQDWDSGDWSGGCVRKNESICRAGEGFQKVTSVKLPDTRTSSFNMTMDLEECRRVCLMNCSCTAYSTLNITDGTGCLLWFEDLLD IREYTETGQDFYIRLSASDLEPTRSPKRTTRVWIIAICLLVAGITILGFCLLFLMRRRKMKTAARMVSMQERDYSINSTGKDLELPVFDFATIAIATSNF SGANKLGEGGFGPVYKGKLEDGQEIAVKRLSKTSTQGLDEFKNEVICIAKLQHRNLVKLLGCCIESEETMLVYEYMPNKSLDAFIFDQKQSKLLDWSMRY NIINGVARGLLYLHQDSRLRIIHRDLKASNILVDYDMNPKISDFGMARSFGGNEIQGNTKRVVGTYGYMSPEYATDGIFSIKSDVFSFGVLVLEIVNGKR NRGFIHQDHKHNLLGHAWKLYKEERSFELINDSLKDTCNLSEVLRVIHVGLLCVQQAPEDRPTMSTVVLMLSSNIALPDPKEPGFFTERKLFDHESSSSK VDTCSANEITITLLTAR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125601 [exp]	0	1
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	2.00	0.9619
					Potri.019G017300 [exp]	3.60	0.9356
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.002G193000 [exp]	4.89	0.9494	Pt-WRKY48.2
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.010G074201 [exp]	5.91	0.9468
AT1G52140			unknown protein		Potri.001G188900 [exp]	6.00	0.9463
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047950 [exp]	6.48	0.9458
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	8.00	0.9216
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.008G048300 [exp]	8.48	0.9330
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	9.16	0.9483
AT3G06130			Heavy metal transport/detoxifi...		Potri.005G036300 [exp]	9.94	0.9213

Compare expression of checked genes

Potri.011G125601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.