Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 838 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 701 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 696 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 694 / 0 ARK2 receptor kinase 2 (.1) AT1G11300 643 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11410 641 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 640 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 640 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 640 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 625 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412000 [exp] 1161 / 0 AT4G27290 815 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129000 [exp] 1147 / 0 AT4G27290 818 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 965 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 923 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 920 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 906 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 905 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412100 [exp] 899 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G125050 [exp] 898 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 851 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 788 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 783 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 779 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 777 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 772 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 767 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10038556 [exp] 764 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 762 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 761 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G125651.1 pacid=42781140 polypeptide=Potri.011G125651.1.p locus=Potri.011G125651 ID=Potri.011G125651.1.v4.1 annot-version=v4.1 ATGAATAACATTACCATACTTTGCTTTTGTTTTACTTCTTTCTTCGTTACATCCCTAGCAGTAGACACCATCTCTGCAAATCACACTATCGGCGATGGAG AGACCATAGTTTCAAGTGGTGAGAGATTTGAACTGGGGTTTTTCAGCCCTGGTAATTCCACGCGGCGGTATTTGGGAATATGGTACAACAAGATATCTAA AGGGAAAGTGGTGTGGGTTGCCAATAGAGAAATCCCAATAACTGATAAGTCAGGAGTCTTAAAGTTTGATGAGAGGGGAGCTCTCATCCTTGCCATTCAG AATGGTAGTGTCATTTGGTCTTCCAATACATCAAGGCACGCGCAGAACCCGGTTGCTCAGCTTTTGGATTCAGGAAATCTTGTGGTCAGAAATGAAAATG ATCGTCGCACAGAAAATTTCGTTTGGCAAAGTTTTGAACATCCTGGAAATACATTTCTACCTGGAATGAAGGTTGGAAGACTAGCTTCTGGATTGGATGT GATTATATCATCATGGAAGAGCAATGATGATCCTTCTCAAGGCCCTTATACCTTTGAGATTGATGGGAAGGGTTTAGAGCTGGTTGTCAGACAGAATTCA GTTCTGAAGTCTCGATCAGGGCCGTGGAATGGTGTTGGCTTTAGTGGTTTGCCTCTTTTGAAACCAGACCCCTTTTTAAGCTATGCTTTTGTTTTTAATG ACAAAGAGGCATACTTAACTTATGATATTAACAGCTCTATTGCTTTGACCTTGGTTTTTGATCAAGACGGTGTCCTGGAGCGGCTCGCCTGGATTGACCG ACTTAATAATTGGATAGTGTACTCAAGTGCACCAGGAGATAACTGCGATAACTATGCACTATGTGGTGCTTATGGCAGGTGCACCATCGGAAACTCCCCA GCATGTGGATGTTTGAACAGATTCGTGCCAAAAAACCAAAGTGAATGGGTAAGGGCAGACTGGTCTAGCGGGTGCGTTCGGAGGACACCGCTGAACTGCC AGAATGGAGTTGGATTTATAAAGTATTATAACATTAAATTGCCAGACTCAAAGATTCGGGCAATGAATAAAAGCATGACAACGGAGGAATGCAGGGTGAA ATGCTTGAATAATTGTTCTTGCATGGCTTATACAAATTCAGATATAAGGGGAAATGGAAGCGGATGCATTCTCTGGTTTGGTGACCTGGTGGACATCAGA CAATACACAGAAGATGGCCAAGATCTTTATATTAGAATGGCTTCTTCTGAAATAGTAGCTCACACTCTAGAGGGCTCTCCCAAGAAGAAAAAAGTGGGCA TCATTGTAAGCGTTGTGTTATCAGCATTGCTTCTCCTAGGCCTTGGTCTGTGCTTGTTCCTCCAGAAGAAGAAGAAGCATAATAGACATAATACTCTTGG TAGGACAAAGAAAGAGGAAAACAATACAGAAGAACAATGGTCTATGAAGATCCAGGATGAAAGTCTAGATTTACCACATTTTGACCTTACTGCAATAGCT AATGCTACCAGCAATTTCTCATTCAACAATTTGCTAGGACAAGGTGGCTTTGGACCTGTCTACAAGGGTGCTTTTAAAGGTGGACAAGACATAGCTGTGA AGAGGCTTTCGAAGGAATCCAGACAAGGGCTTGATGAATTCATGAATGAAGTAAAATGCATTGCAAAACTTCAACATCGAAACCTTGTAAAGCTTCTGGG ATATTGCATAGAACATGAAGAGAAGATTTTGATCTATGAATACATGCCCAACAAAAGTCTAGACATCTACATATTTGATCAAATTCGAAGCAAGTTGCTG GATTGGCCTAAAAGGTTCCACATCATCAATGGGGTATCAAGGGGACTGCTTTATCTCCATCAAGACTCTAGACTACGAATTATTCATAGAGATCTTAAGC TGAGCAACATTTTACTAGATAATGATATGAATCCAAAAATCTCAGACTTTGGTATGGCTAGAAGTTTCGGAGAGAATGAAACAGAAGCGAATACAAGAAG AGTAGTTGGGACATATGGTTATATGTCGCCAGAGTATGCCATTGATGGTCTCTTCTCGATAAAATCCGATGTGTTTAGCTTTGGAGTTTTGGTGTTAGAG ATTGTCAGTGGAAAAAGAAACTGGGGATTTACACATCCAGAACACGAACTCAACCTTCTTGGGCATGTATGGAAGCTATACAAGGAAGGCAGATCTTTGG AGTTGATTGATGAATTAAAAGTAGAATCCTGCTATGTGCCTGAAGTGTTAAGGTCAATCCATGTGGGGCTATTATGTGTGCAACACTCTCCAGAACACAG GCCAAGCATGTCTACAGTGGTTCTTATGTTGGAGGGAAATGGGTTATTGCCTCAACCTAACGAGCCAGGTTTTTTCACAGAAAGAAGATTGATCGAAGAA AACAAGAAAGACCTGAGTTCCACCAATGAAGTAACAATCACAGTACTTGACGGCAGATAG
AA sequence Show only first row Show all	>Potri.011G125651.1 pacid=42781140 polypeptide=Potri.011G125651.1.p locus=Potri.011G125651 ID=Potri.011G125651.1.v4.1 annot-version=v4.1 MNNITILCFCFTSFFVTSLAVDTISANHTIGDGETIVSSGERFELGFFSPGNSTRRYLGIWYNKISKGKVVWVANREIPITDKSGVLKFDERGALILAIQ NGSVIWSSNTSRHAQNPVAQLLDSGNLVVRNENDRRTENFVWQSFEHPGNTFLPGMKVGRLASGLDVIISSWKSNDDPSQGPYTFEIDGKGLELVVRQNS VLKSRSGPWNGVGFSGLPLLKPDPFLSYAFVFNDKEAYLTYDINSSIALTLVFDQDGVLERLAWIDRLNNWIVYSSAPGDNCDNYALCGAYGRCTIGNSP ACGCLNRFVPKNQSEWVRADWSSGCVRRTPLNCQNGVGFIKYYNIKLPDSKIRAMNKSMTTEECRVKCLNNCSCMAYTNSDIRGNGSGCILWFGDLVDIR QYTEDGQDLYIRMASSEIVAHTLEGSPKKKKVGIIVSVVLSALLLLGLGLCLFLQKKKKHNRHNTLGRTKKEENNTEEQWSMKIQDESLDLPHFDLTAIA NATSNFSFNNLLGQGGFGPVYKGAFKGGQDIAVKRLSKESRQGLDEFMNEVKCIAKLQHRNLVKLLGYCIEHEEKILIYEYMPNKSLDIYIFDQIRSKLL DWPKRFHIINGVSRGLLYLHQDSRLRIIHRDLKLSNILLDNDMNPKISDFGMARSFGENETEANTRRVVGTYGYMSPEYAIDGLFSIKSDVFSFGVLVLE IVSGKRNWGFTHPEHELNLLGHVWKLYKEGRSLELIDELKVESCYVPEVLRSIHVGLLCVQHSPEHRPSMSTVVLMLEGNGLLPQPNEPGFFTERRLIEE NKKDLSSTNEVTITVLDGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125651 [exp]	0	1
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	2.82	0.8299
AT1G64160			Disease resistance-responsive ...		Potri.003G134800 [exp]	3.74	0.8070	DRR206.4
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.002G039100 [exp]	3.74	0.8270
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.011G057000 [exp]	4.00	0.8636
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G090400 [exp]	6.92	0.8592
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	15.77	0.8442
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.010G250800 [exp]	18.70	0.7583	ACA9.1
AT2G26190			calmodulin-binding family prot...		Potri.006G147900 [exp]	20.61	0.8288
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.010G188000 [exp]	22.71	0.8284
AT3G19430			late embryogenesis abundant pr...		Potri.009G097400 [exp]	23.91	0.8139

Compare expression of checked genes

Potri.011G125651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.