Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27340 721 / 0 Met-10+ like family protein (.1) AT3G56120 211 / 7e-61 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G04670 51 / 3e-06 Met-10+ like family protein / kelch repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072200 [exp] 203 / 6e-58 AT3G56120 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G408950 [exp] 91 / 4e-22 AT4G27340 71 / 1e-15 Met-10+ like family protein (.1) Potri.004G015200 [exp] 46 / 8e-05 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037871 [exp] 759 / 0 AT4G27340 733 / 0.0 Met-10+ like family protein (.1) Lus10017739 [exp] 178 / 5e-49 AT3G56120 593 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033083 [exp] 176 / 3e-48 AT3G56120 587 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002756 [exp] 51 / 3e-06 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10009743 [exp] 44 / 0.0003 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1) Lus10000172 [exp] 43 / 0.0004 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02475 [poplar] [flax] Met_10 Met-10+ like-protein
Representative CDS sequence Show only first row Show all	>Potri.011G125700.3 pacid=42781701 polypeptide=Potri.011G125700.3.p locus=Potri.011G125700 ID=Potri.011G125700.3.v4.1 annot-version=v4.1 ATGGTTAAAGACCCACTAAAACCTTTCTCTATCCCCTCAACCCCTCAATTTTACCACTTGGAACACCACTCATCCTGCTCTCAAAACACATGCACCACAT CCATTGTAAAAACAATGCTCACCAGACTCTTTCTCAGACCCAACTCAGTCATCCTCTCTCCAACTCACTTCTTTCTCTTCCCCAAACTCTCTCTTACAAA ACCCACCATAGCCTCTAATACCCTCCCATATGGACCCTCCCTTCGAAAGGGTAAAACCTCACTTCACTGCCCTCAACCAAAACTGCGGCGGCGGCAACAA CAACAAGAATATCAATCTCTTTCTGTCCCAAAACCCCTTTATCAATGCAAAGAATACCAGGAAGGTGAAAAAGAAGAGGGCCCTGGTGATGTTAATATGA TAAACGAGGATGACTTCACTCGGGTTTTTGATATAGCTGCTCTTAGAGTTCCTGCAAAGGACTGTTTTTCTCTGGAGAGCAGAATTCGTGGCCATTTATT GAATTGGCCGCGGATTCGAAACATTGCCAGAGTACCTGGAGATGAAATGGAAGAAAGTATGGTTTCTTTGTTGGGAGAGAAAGGAAGTGAAGATGAAGAG AATTTTGATGCTTTTAATAGAAGGATTTATGGGAAAGCAGAAGGAGATGGTGAAGAACTAAGTCCTGTTTTATACAGGGAAAAATTGGCGAACGAGTTCA ATTCAAGGGGGTTTATAAAGTTTAGGAATTTGGCAAAGATTTCGAGGCCGAAGAAGAAGAAGAAGAAGATGGGGGGGAAAGGAGAGGAGGGGGAGGAAAA TGAGAGGGAAAGGAGGGATGAATTTTCTGTGGTGGAAGTTGTGGAAGAGGAGGAAGGAGGGGATTGGAAGGGCTTGTTGGGGGATGAATTCAAGGGGAGG GGGAAATGGATGGGGTCGACGAGGTTGTTGCTTTTGGACGAGAGGTATGCGGAGAAGGGAGTGGATGAGTTGCCCCAAGCAATCAAGGCTGTGGCACAAG AAGCTATGAGAGGGAACTCAACTTCTACCTTTAATCTTGTTAGATGCAAGCTGACTTTGTTTTATGATTACTGGCAGATGAATGAGATCTTGGAGGCCTT ACTGCCACGGGATATGATTATTCCATCAGCTTTTGAAACAGTTGGACATATTGCACATCTGAACCTGAGAGATGAGCATCTGCCATACAAGAAGCTTATA GCAAAGGTAGTGCTGGATAAAAATAAGCCAAAGATACAAACAGTTGTAAATAAGATTGATGCCATACATAATGACTACAGAACAATGCAGCTTGAAGTTT TAGCAGGAAATCACTCCCTTGTTACCATGGTAGTCGAGAATGGATTACGGTTCCATGTTGATTTAGCAGCAGTCTATTGGAATTCCAGGCTTGCTAGTGA AAGGCAAAGACTTCTGAATGGCTTTACGCACAATGATGTCCTTTGTGATGTTTTTGCCGGAGTTGGGCCAATAGCTCTATCTGCTGCAAAGATAGTGAAA CATGTATACGCCAATGATTTGAACCCTTGTGCAGTTCAATATATGGAGAACAATAGTGTTCTCAACAAGCTTGAGAGGCATATTGAGATCTTTAACATGG ATGGAAGAAGGTTCATCGATGCTATGTATGCCAGTCAGAAAGCTCAGTCCATCACACAGGTGGTCATGAACTTGCCAAACGATGCAGTGGAGTATCTAGA TGCATTCAGGGGGATATTCAAGGATAAACCCAAAGATAAAGAATATGCCATGCCAATGATCCATGTTTATGGATTCTCCAAAGCTCGTGATCCAGAATTT GATTTCCACGAGCGGATAAGGATTGCACTGCAAGAGGTGGCAGTTAATGTAGAAATGCGTAGGGTGCGGCAAGTTGCGCCTGGAAAGTGGATGCTGTGTG CATCATTTAGGCTTCCTATAAGTGTAGCGTATGCGCATACTATGTCAAGGATGCAAGCGCATCAAGTTAAATCCTTTTAG
AA sequence Show only first row Show all	>Potri.011G125700.3 pacid=42781701 polypeptide=Potri.011G125700.3.p locus=Potri.011G125700 ID=Potri.011G125700.3.v4.1 annot-version=v4.1 MVKDPLKPFSIPSTPQFYHLEHHSSCSQNTCTTSIVKTMLTRLFLRPNSVILSPTHFFLFPKLSLTKPTIASNTLPYGPSLRKGKTSLHCPQPKLRRRQQ QQEYQSLSVPKPLYQCKEYQEGEKEEGPGDVNMINEDDFTRVFDIAALRVPAKDCFSLESRIRGHLLNWPRIRNIARVPGDEMEESMVSLLGEKGSEDEE NFDAFNRRIYGKAEGDGEELSPVLYREKLANEFNSRGFIKFRNLAKISRPKKKKKKMGGKGEEGEENERERRDEFSVVEVVEEEEGGDWKGLLGDEFKGR GKWMGSTRLLLLDERYAEKGVDELPQAIKAVAQEAMRGNSTSTFNLVRCKLTLFYDYWQMNEILEALLPRDMIIPSAFETVGHIAHLNLRDEHLPYKKLI AKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEVLAGNHSLVTMVVENGLRFHVDLAAVYWNSRLASERQRLLNGFTHNDVLCDVFAGVGPIALSAAKIVK HVYANDLNPCAVQYMENNSVLNKLERHIEIFNMDGRRFIDAMYASQKAQSITQVVMNLPNDAVEYLDAFRGIFKDKPKDKEYAMPMIHVYGFSKARDPEF DFHERIRIALQEVAVNVEMRRVRQVAPGKWMLCASFRLPISVAYAHTMSRMQAHQVKSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27340			Met-10+ like family protein (....		Potri.011G125700 [exp]	0	1
AT4G33540			metallo-beta-lactamase family ...		Potri.010G169900 [exp]	4.47	0.9077
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	13.26	0.9088
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	14.21	0.9215
AT1G12244			Polynucleotidyl transferase, r...		Potri.004G225600 [exp]	14.35	0.9167
AT4G18975			Pentatricopeptide repeat (PPR)...		Potri.011G076800 [exp]	18.73	0.9051
AT2G19870			tRNA/rRNA methyltransferase (S...		Potri.018G087800 [exp]	24.43	0.9166
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Potri.014G030000 [exp]	28.14	0.8569
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	31.52	0.9089
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	32.74	0.9151	IM30.2
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	37.08	0.9142

Compare expression of checked genes

Potri.011G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.