Plant FIBer expression Database

Potri.011G125701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31670 257 / 6e-86 Stress responsive alpha-beta barrel domain protein (.1)
AT1G51360 195 / 3e-62 ATDABB1 dimeric A/B barrel domainS-protein 1 (.1)
AT2G32500 52 / 2e-07 Stress responsive alpha-beta barrel domain protein (.1)
AT3G17210 40 / 0.0002 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G413500
[exp]
396 / 2e-140 AT2G31670 241 / 2e-79 Stress responsive alpha-beta barrel domain protein (.1)
Potri.014G154900
[exp]
50 / 4e-07 AT2G32500 314 / 5e-108 Stress responsive alpha-beta barrel domain protein (.1)
Potri.010G037500
[exp]
44 / 1e-05 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Potri.010G151000
[exp]
41 / 0.0001 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Potri.010G037200
[exp]
40 / 0.0004 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Potri.010G150900
[exp]
39 / 0.0007 AT3G17210 146 / 8e-47 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017873
[exp]
298 / 3e-102 AT2G31670 258 / 4e-87 Stress responsive alpha-beta barrel domain protein (.1)
Lus10034659
[exp]
296 / 1e-101 AT2G31670 264 / 2e-89 Stress responsive alpha-beta barrel domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0032 Dim_A_B_barrel PF07876 Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence
>Potri.011G125701.1 pacid=42780724 polypeptide=Potri.011G125701.1.p locus=Potri.011G125701 ID=Potri.011G125701.1.v4.1 annot-version=v4.1
ATGACGATGTTGTGTCTGAAAGCCGCAAGCCTACTCTCTACCAAACCATTTTACCTCCACTTTCCCGTCCCTAAACACCAGCTCAACCCCTTCTTCTCGT
CCTTCAAGCCGGAGAAGCCTTACTCTGCTTCAGCATCCCGATCCCAAATCAGAATGTCGTCGTCATCCACTCCGCCCCAAACAATTGAACACATAGTCCT
CTTCAAAGTCAAAGAAAACATCGACCCCACTCAAATCAACACCATGATTCATTCCCTCAACCGTCTGATATCACTCGACTCCGTACTCCACTTAACTGCC
GGTGCTCTCTACCGCACCAAGTCCTCACCTATTCCCTTCACTCACATGCTCCACAGCCGTTACTCCTCTAAAGAAAACCTCTCCGCTTATGCCCTTCACC
CGACCCACGTTCAAGTCGTTAAAGAATCGGTTCTACCAATCTGCGATGACATCATGGCTGTCGATTGGGTCACCGGTGATCTCAACGGCGGTGATTCATT
GGTCCCACCTTCTGGGTCCGCGATTAGATTAACATTCTTGAAGTTAAAAGAGGGATTAGGGGATGAAGTGAAAGATGAGATACTGGGAGTAATTCAGGGG
ATTAAAGATACATTTGGAGGAATTGATCACATCAGTTGCGGAGAGAACTTCTCCCCTGCTAGAGCCAAGGGTTATTCGATTGCGTCACTAGCTGTTTTTC
GTGGATTGAGTGAATTGGAGGCGGTGGATTCGGACAAAGAGTTGGCGAATTTGGAGAAAGCTAAGGTTAGAGATTATCTGGAAAGTGTTATGGTTCTTGA
TTATGTTGTGTCCTCATCCAGAGTTTGA
AA sequence
>Potri.011G125701.1 pacid=42780724 polypeptide=Potri.011G125701.1.p locus=Potri.011G125701 ID=Potri.011G125701.1.v4.1 annot-version=v4.1
MTMLCLKAASLLSTKPFYLHFPVPKHQLNPFFSSFKPEKPYSASASRSQIRMSSSSTPPQTIEHIVLFKVKENIDPTQINTMIHSLNRLISLDSVLHLTA
GALYRTKSSPIPFTHMLHSRYSSKENLSAYALHPTHVQVVKESVLPICDDIMAVDWVTGDLNGGDSLVPPSGSAIRLTFLKLKEGLGDEVKDEILGVIQG
IKDTFGGIDHISCGENFSPARAKGYSIASLAVFRGLSELEAVDSDKELANLEKAKVRDYLESVMVLDYVVSSSRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31670 Stress responsive alpha-beta b... Potri.011G125701
[exp]
0 1
AT4G11880 MADS AGL14 AGAMOUS-like 14 (.1) Potri.003G119700
[exp]
1.00 0.6960
AT5G44170 S-adenosyl-L-methionine-depend... Potri.017G017000
[exp]
14.14 0.6293
AT2G33585 unknown protein Potri.005G257100
[exp]
23.68 0.5990
AT5G27820 Ribosomal L18p/L5e family prot... Potri.007G100900
[exp]
26.83 0.6452
AT3G04610 FLK flowering locus KH domain, RNA... Potri.013G043000
[exp]
37.41 0.6387
AT4G16695 unknown protein Potri.003G078100
[exp]
49.64 0.5724
AT3G26980 MUB4 membrane-anchored ubiquitin-fo... Potri.017G068100
[exp]
58.99 0.5721
ATCG00630 ATCG00630.1, PS... PSAJ (.1) Potri.003G067501
[exp]
70.55 0.6096
AT5G18475 Pentatricopeptide repeat (PPR)... Potri.002G103600
[exp]
87.20 0.5469
AT5G64130 cAMP-regulated phosphoprotein ... Potri.004G111900
[exp]
88.68 0.5865

Potri.011G125701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.