Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 824 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 719 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 699 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 678 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 674 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 673 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 663 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 659 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11350 657 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11410 651 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G126001 [exp] 1551 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126101 [exp] 1543 / 0 AT4G27290 817 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 1244 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413000 [exp] 1232 / 0 AT4G27290 827 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413400 [exp] 1214 / 0 AT4G27290 823 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1205 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 1200 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 1192 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 1187 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 868 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 863 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 857 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 836 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 826 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 819 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 817 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014812 [exp] 800 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 792 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 780 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G125751.1 pacid=42780725 polypeptide=Potri.011G125751.1.p locus=Potri.011G125751 ID=Potri.011G125751.1.v4.1 annot-version=v4.1 ATGGGAGTACCAACGGAACATTGCATTCTTGTACTTCTTTTTTGCTCCTCTTTATTGCTTATTGTAGAAACAGGAACTGCTATTGACACCATAAACACAA CTCACTCTATTAGAGATGGTGATACCATAGTTTCAGCTGAAGGAACCTATGTGTTGGGATTTTTCAGCCCTGGAAAATCCAAGAACCGATACGTGGGGAT ATGGTATGGCAAGATACCTGTCGTGACTATAGTTTGGGTTGCCAATAGAGAGACCCCCCTTAATGATTCATCAGGTGTTTTAAGGCTAACTGACTTGGGA ATTCTTGCCATTCTCAATCAGAATGGGACCATAATTTGGTCTTCCAACTCATCGAGATCTGCTTCTAATCCAGCTGCTCAACTTCTGGATTCAGGAAACC TTGTTGTGAAAGAGGAGGGTGATAGCCTGGAAAATTCCTTGTGGCAGAGTTTTGAACATCCAACTGATACAATATTGCCAGGCATGAAGCTTGGAAGGAA TAGAATAACAGGCATGGAGTGGTACATGACATCGTGGAAGTCACCAGATGATCCTTCCAGAGGTAACTTTACTAGTATACTTATTCCTTACGGATATCCT GAGTTGGTTCTGAAGCAAGGTTCAAAAATGAAGTACAGATCAGGGCCATGGGATGGCCTGCGGTTCAGTGGGATACCTAACTTGAAACCAAATCCCGTAT TCAAATTTGAATTTGTTATTAGTGAGGAGGAGATATTCTACAGAGAAAGTCTTGTTGATAAGTCAATGCTTTGGAGGTTCATGACAGATCAGAATGGCGA TATCCCGAGCCTCGCTTGGATTGAGCGAACGCAAAGTTGGTTGCTTTATGATACAGCAAACACAGATAATTGTGATCGCTATGCACTATGTGGTGCAAAC GGTTTATGCAATATTCATAGCTCTCCAGTGTGTGAATGCTTGGATGGGTTCGTACCAAAAGTTCCAACAGACTGGGCCGTGACAGTATGGTCAAGTGGCT GTGTTAGAAGGACTCCACTTAATTGTTCTGGAGATGGGTTTCGAAAGCTCTCTGGAGTGAAGATGCCGGAGACAAAAGCGTCATGGTTTGACAAGAGTTT GGATCTTGAGGAATGCAAGAACACGTGCTTGAAGAACTGCAGCTGTACAGCATATTCAAATATGGACATCAGGGCTGGAGGAAGTGGATGCTTGCTCTGG TTTGGTGACCTCATTGATAATAGAAGGTTTTCTGAAAACGAGCAAAATATTTATATCAGGATGGCTGCATCAGAACTAGATAATGGTGACGGTGCAGAGA TCAATGCTAACTCCAATGTGAAGAAAATAATCATAATAAGCACTTTGTCTACAGGAATTTTTCTGCTTGGACTGGTTTTGGTCTTGTATGTTTGGAGAAG GAAGCATCAGAAAAAAGGAAAAAGTACTGGTGCTTTGGAAAGAAGGTCAAACAACAAGCACAAAAAGGAAGATCTAAAACTACCAGTGTTTGATTTGGAT ACCTTAGCCTGTGCAACAGATAATTTTTCTGTTGACAATAAACTTGGAGAAGGGGGTTTCGGGTCTGTTTACAAGGGAACATTAACAGATGGGCGAGAAA TTGCTGTGAAGAGGCTTTCTAAGAATTCGAGACAAGGAATTGGCGAGTACAAGACTGAGGTTGAGTATATTGTGAAATTTCAGCACCGGAATCTAGTGCA GCTTCTAGGATGCTGCTTTGAGGGAGATGAAAAGATGTTAATCTATGAGTTCCTGCCAAACAAAAGTTTGGACTTCTACATTTTCAATGAAACCGAGGAC ACGCTACTAGATTGGCCAACGCGGTACAACATCATCAATGGAATAGCTCGTGGACTTCTTTATCTTCATCAAGATTCACGACTAAGAGTAATTCATAGGG ACCTGAAAGCCAGCAATATTCTACTGGATTATGAATTGAACCCAAAGATTTCAGACTTTGGCATGGCTAGAAGTTTTAGAGGAAATGAAATTGAAGCCAA TACCAATAAAGTGGTTGGAACATATGGCTACATTTCCCCAGAGTATGCAACTGAAGGGCTCTACTCCTTAAAATCGGATGTCTTCAGCTTTGGTGTATTG GTGCTAGAGATAGTGAGTGGATATAAGAACAGGGGGTTCAGTCATCCAGAACACAATCTCAACCTTCTAGGGCATGCTTGGAGACTATTCCGAGAAGGGA GGCCTATGGAACTGGTTAGGCAATCAATAATTGAAGCATGCAATCTATCTCAAGTGCTACGTTCAATTCACGTGGCTCTACTCTGTGTTCAAGATAATCG AGAAGATAGGCCAGACATGTCATATGTGGTTTTGATGTTGAGTAATGACAATACATTACCTCAGCCTAAACATCCAGGTTTTTTTATTGAAAGGGATCCA GCTGAAGCAAGTTCAACAAGCGAGGGCACAGCAAATTATTCAGCTAACAAATGCTCGATTACATTATTACAGGCAAGGTAG
AA sequence Show only first row Show all	>Potri.011G125751.1 pacid=42780725 polypeptide=Potri.011G125751.1.p locus=Potri.011G125751 ID=Potri.011G125751.1.v4.1 annot-version=v4.1 MGVPTEHCILVLLFCSSLLLIVETGTAIDTINTTHSIRDGDTIVSAEGTYVLGFFSPGKSKNRYVGIWYGKIPVVTIVWVANRETPLNDSSGVLRLTDLG ILAILNQNGTIIWSSNSSRSASNPAAQLLDSGNLVVKEEGDSLENSLWQSFEHPTDTILPGMKLGRNRITGMEWYMTSWKSPDDPSRGNFTSILIPYGYP ELVLKQGSKMKYRSGPWDGLRFSGIPNLKPNPVFKFEFVISEEEIFYRESLVDKSMLWRFMTDQNGDIPSLAWIERTQSWLLYDTANTDNCDRYALCGAN GLCNIHSSPVCECLDGFVPKVPTDWAVTVWSSGCVRRTPLNCSGDGFRKLSGVKMPETKASWFDKSLDLEECKNTCLKNCSCTAYSNMDIRAGGSGCLLW FGDLIDNRRFSENEQNIYIRMAASELDNGDGAEINANSNVKKIIIISTLSTGIFLLGLVLVLYVWRRKHQKKGKSTGALERRSNNKHKKEDLKLPVFDLD TLACATDNFSVDNKLGEGGFGSVYKGTLTDGREIAVKRLSKNSRQGIGEYKTEVEYIVKFQHRNLVQLLGCCFEGDEKMLIYEFLPNKSLDFYIFNETED TLLDWPTRYNIINGIARGLLYLHQDSRLRVIHRDLKASNILLDYELNPKISDFGMARSFRGNEIEANTNKVVGTYGYISPEYATEGLYSLKSDVFSFGVL VLEIVSGYKNRGFSHPEHNLNLLGHAWRLFREGRPMELVRQSIIEACNLSQVLRSIHVALLCVQDNREDRPDMSYVVLMLSNDNTLPQPKHPGFFIERDP AEASSTSEGTANYSANKCSITLLQAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125751 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126101 [exp]	2.44	0.8764
AT1G56130			Leucine-rich repeat transmembr...		Potri.007G067900 [exp]	10.09	0.9015
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126001 [exp]	17.91	0.8229
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.002G052100 [exp]	18.81	0.8842	CPS.1
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.005G045900 [exp]	27.12	0.8721
					Potri.001G019985 [exp]	35.77	0.8719
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	39.11	0.8688
AT5G19970			unknown protein		Potri.018G071900 [exp]	41.66	0.8488
AT1G27040			Major facilitator superfamily ...		Potri.002G129500 [exp]	43.15	0.8668
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067600 [exp]	45.98	0.8613

Compare expression of checked genes

Potri.011G125751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.