Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP14.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20630 1258 / 0 PER1, ATUBP14, TTN6, UBP14 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) AT2G40930 46 / 9e-05 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT3G14400 45 / 0.0002 UBP25 ubiquitin-specific protease 25 (.1) AT1G51710 44 / 0.0004 ATUBP6, UBP6 ubiquitin-specific protease 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G408800 [exp] 1442 / 0 AT3G20630 1236 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Potri.017G056900 [exp] 47 / 4e-05 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.006G033800 [exp] 46 / 0.0001 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.007G063900 [exp] 45 / 0.0002 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.002G244500 [exp] 43 / 0.0005 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G394600 [exp] 44 / 0.0006 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.006G185200 [exp] 44 / 0.0006 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.005G110500 [exp] 43 / 0.0008 AT2G26000 605 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.018G107500 [exp] 43 / 0.001 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037870 [exp] 1278 / 0 AT3G20630 1269 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10038564 [exp] 1145 / 0 AT3G20630 1142 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10027289 [exp] 50 / 8e-06 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 50 / 9e-06 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10033243 [exp] 45 / 0.0002 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 45 / 0.0002 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10035825 [exp] 45 / 0.0003 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 45 / 0.0003 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10016360 [exp] 45 / 0.0003 AT4G30890 494 / 7e-170 ubiquitin-specific protease 24 (.1.2.3) Lus10021683 [exp] 43 / 0.0008 AT2G26000 565 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Potri.011G125800.2 pacid=42781689 polypeptide=Potri.011G125800.2.p locus=Potri.011G125800 ID=Potri.011G125800.2.v4.1 annot-version=v4.1 ATGGAGCTGCTCCGATCGAATCTCTCTCGGGTTCGGATCCCTGAACCAACTAATCGCATCTACAAGCATGAGTGCTGCGTCTCCTTCGAAACTCCGAGGT CTGAAGGCGGGTTGTTTGTCGACATGACCACATTTCTTGCTTTTGGGAAAGATTATGTGGATTGGAATTATGAGAAGACTGGAAACCCTGTTTATTTACA CATAAAGCAAACCAGGAAGGTGGTCCCTGAAGACCGGCCTTCCAAGAAACCAACTCTTTTGGCTATTGGTGTTGAAGGGGGATTTGACAACAATGAACCT CAATATGAAGAAACTCACAATATAGTTATATTACCTGATTATGTTACTTTTCCATTCCCTTCAGTGGAGTTGCCAGAGAAGGTAAGGTTGGCTGTTGATG CTATCATAATGGCTGAAGGTGCAGAGAGGAAAGAGCAACTTGCTGCCTGGACAGCTGATAAGAAGCAAGTTAGTGCATATGCAATGAATTTACCACAGAT TGACAATGGTGTTATTGTCCCGCCGTCTGGATGGAAATGTGTCAAGTGTGACAAAAAAGAAAATTTGTGGCTAAATCTTACTGATGGAATGATTCTTTGT GGGCGAAAGAATTTTGATGGAACTGGAGGCAACAACCATGCCATTGAACATTACAAGGAGACAAGCTACCCTCTTGCTGTGAAGCTTGGGACAATTACCG CTGATCTTGAAGCAGCAGATGTTTTCTCATATCCAGAGGATGATAGTGTTGTGGACCCGCTTTTAGCACAACATTTGGCATTTTTCGGCATTGATTTTTC TGCCTTACAAAAGACTGAAATGACTACTGCTGAGAGGGAACTTGACCAGAATACCAACTTTGATTGGAACCGAATTCAGGAAAGTGGACAGGATTCGGAA CTCATTCATGGACCCGGTTATACAGGACTTGCGAATCTTGGAAACAGCTGCTACATGGCAGCAACGATGCAAGTTGTGTTCTCAACACGTTCCTTCAATT CACGATACTACACTAACCAAAGCTTAAAAATGGCATTTGAGATGGCTCCTGCTGATCCAACTGTAGACTTAAATATGCAGCTTACAAAGCTGGCACATGG TATGCTGTCTGGCAAATACTCGGTTCCAGCACCCGAGAAGGATGATGAAGAGAATGCTGCTATCTCAACAACCAACAAACAGGAAGGTATACCCCCTCGT ATGTTCAAAGCAGTTATTGCTGCCAGCCATCCTGAGTTTTCTTCCATGAGGCAACAGGATGCATTGGAATTCTTCCTACACTTTCTTGATCAAGTCGAAC GTGTTAATGGCGGGAGTTCTGCATTGGATCCTTCAAGGAGTTTCAAGTTTGGAATTGAAGAACGTATCCTGTGTCCATCTGGAAAAGTTGGGTTCAATAA AAGGCTTGACTATATTCTCTCTTTGAATATTCCCCTACATGAAGCTACCAATAAAGAAGAACTAGAAGCCTTCCACAAATTGAAAGCAGAAAAGATTTCT GAAGGAAAGGATGTGTCCCATGATGAAATTGTGCGTCCAAGGGTTCCCCTAGCAGCATGCCTTGCTAATTATTCAGCTCCAGAGGAGATACAAGATTACT ATAGCACTGCCTTGAAGGCTAAGACAACAGCACTGAAGACTGCTGGTCTAACTTCATTCCCTGATTATTTGGTGTTGCACATGCGAAAATTTGTATTGGA GGAAGGCTGGGTGCCAAAAAAGCTTGATGTCTACATAGATGTTCCTGATATCATAGATATCAGCTACATGCGAAGCAAAGGCCTTCAACCAGGGGAGGAG TTGTTACCAGATGGGGTCCCTGAGGCAGAGGTGGAATCAAATAACCCTGTGGCCAATGAGGATATTGTTGCCCAGCTTGTCTCAATGGGGTTCAATCATC TACACTGCCAGAAAGCTGCTATAAATACCTCAAATACTGGAGTAGAAGAGGCTATGAATTGGTTGCTTGCTCACATGGATGACCCAGATATAGATGTTCC TGTTTCCCAAGGGGCACATGGTAATGAAGTTGATCAATCGAAAGTTGATACCCTACTATCATTTGGTTTTCAAGAAGAAATTGCTCGAAAGGCACTTAAG GCATCGGGTGGTGACATTGAGAAAGCTACAGATTGGATATTCAACAATCCTGATGCTTCTGTTTCATCTGACATGGACACCTCCACATCAAGCTCAAAAC CTACTCCTGATGACACTGAATTACCTGATGGAAGAGGGAGATACAGGCTTTTTGGGATAGTGAGCCACATGGGAACCTCCACCCACTGTGGACATTATGT TGCTCACGTCCTGAAAGATGGCAGATGGGTAATCTTCAACGACAACAAGGTTGCGGCCTCCATAAACCCCCCCAAGGACATGGGGTATTTGTACTTCTTT GAGAGGCTTGACAGCTGA
AA sequence Show only first row Show all	>Potri.011G125800.2 pacid=42781689 polypeptide=Potri.011G125800.2.p locus=Potri.011G125800 ID=Potri.011G125800.2.v4.1 annot-version=v4.1 MELLRSNLSRVRIPEPTNRIYKHECCVSFETPRSEGGLFVDMTTFLAFGKDYVDWNYEKTGNPVYLHIKQTRKVVPEDRPSKKPTLLAIGVEGGFDNNEP QYEETHNIVILPDYVTFPFPSVELPEKVRLAVDAIIMAEGAERKEQLAAWTADKKQVSAYAMNLPQIDNGVIVPPSGWKCVKCDKKENLWLNLTDGMILC GRKNFDGTGGNNHAIEHYKETSYPLAVKLGTITADLEAADVFSYPEDDSVVDPLLAQHLAFFGIDFSALQKTEMTTAERELDQNTNFDWNRIQESGQDSE LIHGPGYTGLANLGNSCYMAATMQVVFSTRSFNSRYYTNQSLKMAFEMAPADPTVDLNMQLTKLAHGMLSGKYSVPAPEKDDEENAAISTTNKQEGIPPR MFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERVNGGSSALDPSRSFKFGIEERILCPSGKVGFNKRLDYILSLNIPLHEATNKEELEAFHKLKAEKIS EGKDVSHDEIVRPRVPLAACLANYSAPEEIQDYYSTALKAKTTALKTAGLTSFPDYLVLHMRKFVLEEGWVPKKLDVYIDVPDIIDISYMRSKGLQPGEE LLPDGVPEAEVESNNPVANEDIVAQLVSMGFNHLHCQKAAINTSNTGVEEAMNWLLAHMDDPDIDVPVSQGAHGNEVDQSKVDTLLSFGFQEEIARKALK ASGGDIEKATDWIFNNPDASVSSDMDTSTSSSKPTPDDTELPDGRGRYRLFGIVSHMGTSTHCGHYVAHVLKDGRWVIFNDNKVAASINPPKDMGYLYFF ERLDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Potri.011G125800 [exp]	0	1	Pt-UBP14.1
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.007G137200 [exp]	1.00	0.8020
AT3G52630			Nucleic acid-binding, OB-fold-...		Potri.006G212100 [exp]	5.29	0.7956
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	13.78	0.7763
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120400 [exp]	45.89	0.7376
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.008G061300 [exp]	50.01	0.7566	RAB11.9
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Potri.011G107400 [exp]	51.22	0.7206	Pt-KU70.1
AT2G38430			unknown protein		Potri.019G029900 [exp]	54.91	0.7466
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	64.22	0.7508	Pt-ATMSI4.2,NFC907
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	64.99	0.7582
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	75.45	0.7138

Compare expression of checked genes

Potri.011G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.