Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 659 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 601 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 574 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 555 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 553 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 538 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 537 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 521 / 1e-175 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 506 / 5e-170 S-locus lectin protein kinase family protein (.1.2) AT1G61500 488 / 2e-163 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G413300 [exp] 1011 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413000 [exp] 1002 / 0 AT4G27290 827 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413400 [exp] 957 / 0 AT4G27290 823 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 954 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017600 [exp] 952 / 0 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 950 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 949 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 947 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 947 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038553 [exp] 724 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 701 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 699 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 668 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 665 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 661 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 650 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 649 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 644 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 636 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G125801.1 pacid=42780430 polypeptide=Potri.011G125801.1.p locus=Potri.011G125801 ID=Potri.011G125801.1.v4.1 annot-version=v4.1 ATGATGGTTCCTTATGGATATCCTGAGATAGTACTAACGGAAGGCTCGAAAGTGAAGTGCAGGTCTGGAGCATGGAACGGTATACTGTTAAGTGGTTTAA CTCAATTAAAATCAACTTCCAAGTTCACAATTGAATTTCTTTTTAATGAAAAAGAGATGTTTTTGACATATCATTTTCATAGTAGCTCAATTCTTTCAAG GGCCGTGGTCAGTCCAAATGGAGATTTCCAGGAATTCGTGTTGAATGAGAAAACACAAAGTTGGTTCCTGTACGATACTGGAACTACAGATAATTGTGAT CGTTATGCACTATGTGGTACAAATGGAATATGTAGTATTGACAGTTCTCCAGTACTGTGTGATTGCTTGGATGGATTTGTACCTAAAACTCCAAGAGATT GGAACGTGGCCGATTGGTCAAACGGTTGTGTTAGAAGGACTCCACTAAATTGTTCTGGAGATGGCTTTCAGAAGCTCTCTGGACTGAAGTTGCCAGAGAC AAAAACGTCATGGTTTAACACGAGTATGAATCTTGAGGAGTGCAAAAAAAAGTGTATAAAGAACTGTAGCTGTACAGCATATTCAAATTTGGACATCAGG AATGGAGGAAGTGGGTGCTTGCTCTGGTTTGGCGACCTGATTGACATAAGAGTTATTGCTGTAAATGAGCAAGATGTTTATATACGGATGGCTGAGTCAG AACTAGATAATGGAGATGGCGCAAAGATAAATACAAAATCCAATGCGAAGAAAAGGATCATAATAAGCACTGCATTGTTTACTGGAATTCTGTTCCTTGG CCTAGCCCTGGTCTTGTATATTTGGAAGCAGCAACAGAAAAATATTCTGCGTGCAGGACAATCAAATAACATGCGCAAGAAGGAAGACCTGGAACTACCA TTTTTTGATTTTGGTACCTTGGCATGTGCAACAAATAATTTTTCCACTGACAACAAACTTGGAGAAGGCGGTTTCGGACCAGTTTACAAGGGAACATTAG CAGATGGACGAGAAATAGCTGTCAAGAGGCTTTCTAGGAATTCGAGACAAGGACTTGATGAGCTCAAAAATGAGGCAAATTACATTGTGAAACTTCAGCA CCGGAATCTAGTGAAGCTTCTAGGATGCTGCATTGAAGGAGATGAAAAGATGTTGATCTATGAGTTCTTGCCCAACAAAAGCTTGGACGTTTTAATTTTC GAAAAAACACACAGCTTGCAACTAGACTGGCCCAAGCGCTACAAAATTATCAATGGGATTGCTCGTGGAATCCTTTATCTTCACCAGGACTCAAGACTAA GAGTAATTCACAGAGATCTGAAAGCCAGCAATATTTTGTTGGACTATGAACTGAGCCCAAAAATTTCAGACTTTGGCCTGGCTAGAAGTTTTGGAGGGAA TGAAACCGAAGCCAATACTAATAAAGTGGCTGGTACATTCGGCTACATATCTCCTGAGTACGCAAATTATGGACTCTACTCACTAAATTCGGACGTCTTC AGTTTTGGTGTATTGGTGCTAGAGATAGTAAGTGGGAAAAGAAACAGAGGATTCTGTCATCCAGACCACCACCTCAACCTTCTTGGGCATGCTTGGAAAC TTTTCAAAGAAAACAGGTCTGTGGAACTGGCTGCAGAATCCTTTGTTATAACATGCAATTTATCGGAAGTGTTACGTTCAATTCACGTGGGTTTATTATG TGTGCAAGAAGATCCAGAAGACAGGCCAAACATGTCGAATGTAGTTTTGATGTTGGGTAATGAAGATGAATTGCCCCATCCTAGACAACCAGGTTTTTTC TTTGAAAGGGATCTGATTGAAGCAGCTTATTCTTCCAGCCCGAGCAAACCATGTTCAGCTAATGAATGCTCGATTTCAGAGTTAGAACAAAGATAG
AA sequence Show only first row Show all	>Potri.011G125801.1 pacid=42780430 polypeptide=Potri.011G125801.1.p locus=Potri.011G125801 ID=Potri.011G125801.1.v4.1 annot-version=v4.1 MMVPYGYPEIVLTEGSKVKCRSGAWNGILLSGLTQLKSTSKFTIEFLFNEKEMFLTYHFHSSSILSRAVVSPNGDFQEFVLNEKTQSWFLYDTGTTDNCD RYALCGTNGICSIDSSPVLCDCLDGFVPKTPRDWNVADWSNGCVRRTPLNCSGDGFQKLSGLKLPETKTSWFNTSMNLEECKKKCIKNCSCTAYSNLDIR NGGSGCLLWFGDLIDIRVIAVNEQDVYIRMAESELDNGDGAKINTKSNAKKRIIISTALFTGILFLGLALVLYIWKQQQKNILRAGQSNNMRKKEDLELP FFDFGTLACATNNFSTDNKLGEGGFGPVYKGTLADGREIAVKRLSRNSRQGLDELKNEANYIVKLQHRNLVKLLGCCIEGDEKMLIYEFLPNKSLDVLIF EKTHSLQLDWPKRYKIINGIARGILYLHQDSRLRVIHRDLKASNILLDYELSPKISDFGLARSFGGNETEANTNKVAGTFGYISPEYANYGLYSLNSDVF SFGVLVLEIVSGKRNRGFCHPDHHLNLLGHAWKLFKENRSVELAAESFVITCNLSEVLRSIHVGLLCVQEDPEDRPNMSNVVLMLGNEDELPHPRQPGFF FERDLIEAAYSSSPSKPCSANECSISELEQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125801 [exp]	0	1
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.012G079100 [exp]	2.23	0.9484
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.015G032100 [exp]	2.44	0.9679	TPS1.4
					Potri.010G133401 [exp]	2.64	0.9416
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157400 [exp]	14.07	0.9675
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.005G106100 [exp]	15.62	0.9608	Pt-CTS2.5
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.013G125300 [exp]	18.24	0.9637	Pt-CYP82.15
					Potri.001G203700 [exp]	19.36	0.9171
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Potri.006G169800 [exp]	21.35	0.8770
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220900 [exp]	24.41	0.8812	CYP94.8
					Potri.001G388100 [exp]	26.68	0.9132

Compare expression of checked genes

Potri.011G125801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.