Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 841 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 739 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 704 / 0 ARK2 receptor kinase 2 (.1) AT4G27300 697 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 693 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 655 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 652 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11410 650 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 623 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 620 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G128800 [exp] 1289 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126201 [exp] 1286 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 1248 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1229 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 1226 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 1221 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 1215 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 1215 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017600 [exp] 1211 / 0 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 898 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 890 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 885 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 849 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 839 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 833 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 829 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 805 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 798 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 782 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G125901.1 pacid=42780760 polypeptide=Potri.011G125901.1.p locus=Potri.011G125901 ID=Potri.011G125901.1.v4.1 annot-version=v4.1 ATGAGAGTACCAGTGTATTACATTGCCATACTTCTCTTTTGCTCCTCTTTATTGCTGATTATACAAACAGCCACAGCTATTGACACCATAAACACAACTC AGTCCATTAGAGATGGCGATAACATAACTTCATCTGGTGGAAACTATGTGTTAGGGTTTTTCAGCCCAGGAAATTCCAAACACCGGTTCTTGGGGATATG GTATGGCAAAATATCTGTCCTGACTGCTGTTTGGGTTGCCAACAGAGAGGCTCCACTTAACGATTCATCGGGTGTTTTACGGCTTACAGACGAAGGAATT CTTGTCCTTCTCAATCGTACCGGGAGTGTAATTTGGTCTTCAAACACGTCAACACCAGCAAGGAATGCAGTTGCACAGCTTTTGGATTCAGGAAACCTTG TTGTGAAAGAGAAGGGTGATCATAACCTAGAAAATCTCTTATGGCAGAGTTTTGAACATCTCAGTGATACATTGTTGCCAGAAATGAAGCTAGGACGGAA TAGAATAACGGGCATGGACTGGTACATTACATCATGGAAGTCAACGGATGATCCTTCGAGAGGTAACGTCTCAGAAATCCTTGTTCCTTATGGATATCCG GAGATACTTGTGATGGAGAATTCAATTGTGAGGCATCGGTCAGGACCGTGGAACGGCCTGCGATTCAGTGGTACGCCTCAGTTGAAACCAAATCCCATGT ATACATTTGAATTTGTTTATAATGAGAAGGAGATATTCTACCGATATCATGTTCTTAATAGCTCAATGCTTACAAGGCTCGTGGTAACTCAAAATGGCGA TATCCAGCGCTTTGCCTGGATTTCTCGGACACAAAGCTGGATAATTTATCTTACAGTAAATACTGATAATTGTGAACGTTATGCCCTATGTGGTGCAAAT GGTATCTGTAGTATTGACAATTCACCAGTGTGCAATTGTTTGAATGGATTTGTACCGAATGTTCAAAGCGAATGGGAGATGATGGACTGGTCAAGCGGTT GCCTTAGAAGGACTCCACTAAATTGTTCTGGAGATGGGTTTCGACAGCTCTCAGGTGTGAAGTTGCCTGAGACTAAAACATCATGGTTTAACAAGAGTAT GAACCTCGAGGAATGCAGGAACACATGCTTGAAGAACTGCAGTTGTACAGCATTTTCAAATTTGGACATCAGGAATGGAGGAAGTGGGTGTTTGCTCTGG TTTGGTGACCTGATTGATATCAGAATTTTCGTTGACAATAAGCCAGACATTTATGTAAGGATGGCAGCTTCTGAACTAGATAATGGTGGCGCTGTGAAGA TTAATGCTAAATCCAATATGAAGAAGAGGATCATAGTAAGCACTGCGTTGTCTACAGGGATTCTATTCCTTTTCCTAGCCTTGTTCTGGTATATTTGGAA AAAAAAGCAGCAGAAAAAGGGAAAAGTCACAGGTATTGTTAGAAGTTCAATTAACAATCCAGGAGAAGATCTTGATTTACCGTTGTTCTATTTGGATACC TTGACTCTTGCTACCAATAACTTTTCAGTTGACAACAAGCTTGGAGAAGGGGGTTTCGGAGCAGTTTATAAGGGGACTTTGAAAGATGGACAAGAAATAG CTGTGAAGAGGCTCTCTAAGAATTCAAGACAAGGACTTGATGAGTTCAAAAATGAAGTCAAATACATGGTGAAACTTCAGCACCGGAATCTGGTGAAGCT TCTAGGTTGCTGCATTGAAGGCGATGAGTATATGTTGATCTACGAGTTCCTGCCTAACAAAAGCTTGAACTTCTTTATTTTCGATGAAACACACAGCTTG AAACTAGATTGGCCTAAGCGCTACAACATCATCAATGGGATTGCTCGTGGACTCCTTTATCTTCACCAAGATTCAAGACTAAGAGTAATTCATAGAGATC TAAAAGCAAGCAATGTTTTATTGGATTACGAAATGAACCCAAAAATCTCAGACTTTGGCCTGGCTAGAAGTCTTGGAGGAAATGAAACCGAAGCCAATAC AAATAAAGTGGTTGGAACATATGGCTATATATCCCCTGAATATGCCATTGATGGACTCTACTCGCCAAAATCCGACGTCTTCAGCTTTGGAGTGCTGGTG CTAGAGATATTGAGTGGGAATAGGAATCGAGGATTCTGTCATCCTGACCACAACCTCAACCTTCTGGGGCACGTAAGTGAAAAAACTGTATCATTTCATA ATCTTAAATACCGATCTCATTCTAACAACATGGTTTCATTATATCAGGCTTGGAAGCTGTTTACTGAAGGCAGGCCTTTGGAACTGGTTTCGGAATCAAT AGTTGAAACTTGCAATTTATCTGAAGCGCTCCGTTTGATTCACGTGGGTTTATTATGCGTGCAAGAAAATCCAGAAGACAGGCCAACCATGTCATATGTG GTTTTGATGTTGGGTAATGAAGATGCCTTGCCTCGGCCTAAACAACCTGGTTTTTACACTGAAAGGGATTTGATTGAAGCAGCTTATACATCAAATTCAA GCCAGAGCAAACCATATTCGGCTAATGAATGCTCGATTTCGATGATAGAGGCAAGATAA
AA sequence Show only first row Show all	>Potri.011G125901.1 pacid=42780760 polypeptide=Potri.011G125901.1.p locus=Potri.011G125901 ID=Potri.011G125901.1.v4.1 annot-version=v4.1 MRVPVYYIAILLFCSSLLLIIQTATAIDTINTTQSIRDGDNITSSGGNYVLGFFSPGNSKHRFLGIWYGKISVLTAVWVANREAPLNDSSGVLRLTDEGI LVLLNRTGSVIWSSNTSTPARNAVAQLLDSGNLVVKEKGDHNLENLLWQSFEHLSDTLLPEMKLGRNRITGMDWYITSWKSTDDPSRGNVSEILVPYGYP EILVMENSIVRHRSGPWNGLRFSGTPQLKPNPMYTFEFVYNEKEIFYRYHVLNSSMLTRLVVTQNGDIQRFAWISRTQSWIIYLTVNTDNCERYALCGAN GICSIDNSPVCNCLNGFVPNVQSEWEMMDWSSGCLRRTPLNCSGDGFRQLSGVKLPETKTSWFNKSMNLEECRNTCLKNCSCTAFSNLDIRNGGSGCLLW FGDLIDIRIFVDNKPDIYVRMAASELDNGGAVKINAKSNMKKRIIVSTALSTGILFLFLALFWYIWKKKQQKKGKVTGIVRSSINNPGEDLDLPLFYLDT LTLATNNFSVDNKLGEGGFGAVYKGTLKDGQEIAVKRLSKNSRQGLDEFKNEVKYMVKLQHRNLVKLLGCCIEGDEYMLIYEFLPNKSLNFFIFDETHSL KLDWPKRYNIINGIARGLLYLHQDSRLRVIHRDLKASNVLLDYEMNPKISDFGLARSLGGNETEANTNKVVGTYGYISPEYAIDGLYSPKSDVFSFGVLV LEILSGNRNRGFCHPDHNLNLLGHVSEKTVSFHNLKYRSHSNNMVSLYQAWKLFTEGRPLELVSESIVETCNLSEALRLIHVGLLCVQENPEDRPTMSYV VLMLGNEDALPRPKQPGFYTERDLIEAAYTSNSSQSKPYSANECSISMIEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125901 [exp]	0	1
AT4G23130		RLK6, CRK5	RECEPTOR-LIKE PROTEIN KINASE 6...		Potri.004G025900 [exp]	2.64	0.9556
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024900 [exp]	11.57	0.9427
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.016G056600 [exp]	25.57	0.9381
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.010G092400 [exp]	29.32	0.9362
AT4G31980			unknown protein		Potri.003G209832 [exp]	35.32	0.9342
AT1G03670			ankyrin repeat family protein ...		Potri.013G133400 [exp]	44.98	0.9326
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.007G100500 [exp]	46.69	0.9323	Pt-NHX8.1
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Potri.008G121200 [exp]	47.27	0.9299
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004500 [exp]	53.99	0.9322	QLEG.3
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025100 [exp]	56.65	0.9085

Compare expression of checked genes

Potri.011G125901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.